Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LGV82_RS14645 Genome accession   NZ_CP086104
Coordinates   3112471..3112839 (-) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain RS650     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107471..3117839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV82_RS14635 (LGV82_14625) - 3109390..3111621 (-) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -
  LGV82_RS14640 (LGV82_14630) - 3111867..3112412 (-) 546 WP_011000625.1 chemotaxis protein CheW -
  LGV82_RS14645 (LGV82_14635) pilH 3112471..3112839 (-) 369 WP_003269243.1 response regulator Machinery gene
  LGV82_RS14650 (LGV82_14640) pilG 3112871..3113338 (-) 468 WP_016723446.1 response regulator Regulator
  LGV82_RS14655 (LGV82_14645) - 3113629..3113811 (-) 183 WP_003261842.1 rubredoxin -
  LGV82_RS14660 (LGV82_14650) hemL 3114023..3115324 (+) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LGV82_RS14665 (LGV82_14655) dapA 3115427..3116341 (-) 915 WP_071507572.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LGV82_RS14670 (LGV82_14660) - 3116722..3117348 (+) 627 WP_016723449.1 LemA family protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=540377 LGV82_RS14645 WP_003269243.1 3112471..3112839(-) (pilH) [Ralstonia pseudosolanacearum strain RS650]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=540377 LGV82_RS14645 WP_003269243.1 3112471..3112839(-) (pilH) [Ralstonia pseudosolanacearum strain RS650]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434