Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JTY93_RS01875 Genome accession   NZ_CP070506
Coordinates   440059..441390 (+) Length   443 a.a.
NCBI ID   WP_205477369.1    Uniprot ID   -
Organism   Pseudomonas hygromyciniae strain SDM007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435059..446390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTY93_RS01855 (JTY93_01855) pilM 437656..438309 (+) 654 WP_205477342.1 type IV pilus biogenesis protein PilM -
  JTY93_RS01860 (JTY93_01860) - 438309..438860 (+) 552 WP_205477343.1 PilN domain-containing protein -
  JTY93_RS01865 (JTY93_01865) - 438857..439477 (+) 621 WP_205477344.1 type 4a pilus biogenesis protein PilO -
  JTY93_RS28830 (JTY93_01870) - 439474..439989 (+) 516 WP_205477345.1 pilus assembly protein PilP -
  JTY93_RS01875 (JTY93_01875) pilQ 440059..441390 (+) 1332 WP_205477369.1 type IV pilus secretin PilQ Machinery gene
  JTY93_RS01880 (JTY93_01880) aroK 441395..441913 (+) 519 WP_029296072.1 shikimate kinase AroK -
  JTY93_RS01885 (JTY93_01885) aroB 442061..443161 (+) 1101 WP_169992065.1 3-dehydroquinate synthase -
  JTY93_RS01890 (JTY93_01890) - 443172..444752 (+) 1581 WP_205477346.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 47984.86 Da        Isoelectric Point: 4.7781

>NTDB_id=540345 JTY93_RS01875 WP_205477369.1 440059..441390(+) (pilQ) [Pseudomonas hygromyciniae strain SDM007]
MTEAVPKRIDLIQLPPPGASPLGAGRGAYSGDRLSLNFQDIEVRAVLQQIADVAGLNLVAGDDVQGSITLRLKDVPWDQA
LDLVLQAKGLDKRVTANVLLVAPAEELASRELLALESRKLMTELAPLRRELLQVNYAKAAELAKLFQSVSGPEGVADERG
SVTVDDRTNNIIAYQTGERLEELRRIVNQLDIPVRQVMIEARIVEANVDYDKSVGVRWGGLLRNKGNWGGGGVGNKTPGE
GEPPDSSPFVDLGVVNASSGLGVAFITDNVLLDLELTAMEKGGNGEVISQPKVVTSNKETARILKGTEIPYQEATSEGAT
SVSFKEASLSLEVTPQITPDDQVIMEVRVTKDEPDYLNKLNDVPPIKKNEVTAKVLVKDGETIVLGGVFSKNQSKVVDKV
PFLGDVPYLGRLFRRDVVAQRKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=540345 JTY93_RS01875 WP_205477369.1 440059..441390(+) (pilQ) [Pseudomonas hygromyciniae strain SDM007]
ATGACTGAGGCTGTGCCCAAGCGGATTGACCTGATTCAACTGCCGCCTCCCGGTGCTTCGCCCTTGGGCGCCGGGCGTGG
GGCCTATAGCGGTGACAGGCTCTCTCTCAACTTCCAGGACATCGAGGTTCGTGCAGTACTTCAGCAGATTGCCGACGTGG
CTGGCCTCAACCTGGTGGCCGGCGATGATGTGCAGGGCTCGATTACCCTGCGCCTCAAGGACGTGCCCTGGGATCAGGCC
CTGGACCTGGTGCTGCAAGCCAAGGGGCTCGATAAGCGGGTGACGGCCAATGTGCTGCTGGTGGCGCCGGCTGAGGAACT
GGCCTCTCGCGAACTGCTGGCCTTGGAGTCGCGCAAGTTGATGACCGAGCTGGCGCCCTTGCGGCGGGAGCTGTTGCAAG
TCAATTACGCCAAGGCGGCCGAGTTGGCCAAGCTGTTCCAGTCGGTGAGCGGGCCTGAAGGTGTGGCCGATGAGCGTGGT
TCGGTGACGGTAGATGACCGTACCAACAACATCATCGCCTACCAGACGGGGGAGCGCCTGGAGGAGCTGCGGCGCATCGT
CAATCAGTTGGATATCCCGGTGCGGCAGGTGATGATCGAGGCGCGGATAGTCGAAGCCAATGTCGACTATGACAAAAGCG
TGGGCGTGCGCTGGGGTGGTTTGCTGCGCAATAAAGGTAATTGGGGCGGTGGTGGGGTTGGCAATAAAACACCAGGTGAG
GGTGAGCCGCCCGATAGCTCGCCGTTCGTTGACCTGGGCGTGGTTAACGCAAGCTCTGGCCTGGGCGTCGCGTTTATCAC
CGATAACGTGCTGCTGGACCTGGAACTCACGGCCATGGAAAAAGGCGGCAACGGCGAAGTGATCTCCCAGCCCAAGGTGG
TCACCTCCAACAAGGAGACCGCGCGGATTCTCAAGGGCACCGAGATTCCTTATCAGGAAGCCACTTCCGAGGGGGCGACT
TCGGTCTCGTTCAAGGAGGCCTCGCTTTCTTTGGAGGTGACGCCGCAAATCACGCCGGATGATCAGGTCATCATGGAAGT
CCGGGTGACCAAGGATGAGCCGGACTACCTGAACAAACTCAACGATGTGCCGCCGATCAAGAAGAACGAGGTCACTGCCA
AGGTTCTGGTCAAGGATGGCGAGACCATTGTCCTTGGCGGGGTTTTCTCCAAAAACCAAAGCAAGGTGGTAGATAAAGTG
CCATTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTCGTTGCCCAAAGAAAATCCGAGCTGCTGGT
ATTCCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(131-196)

Bacterial type II and III secretion system protein (Secretin)

(278-434)

Secretin and TonB N terminus short domain (STN)

(57-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

69.635

98.871

0.688
  comQ Acinetobacter baylyi ADP1

43.016

100

0.438
  pilQ Acinetobacter baumannii strain A118

41.469

100

0.433
  pilQ Acinetobacter baumannii D1279779

41.469

100

0.433
  pilQ Vibrio campbellii strain DS40M4

45.154

95.485

0.431
  pilQ Vibrio cholerae strain A1552

45.455

94.357

0.429
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

45.455

94.357

0.429
  pilQ Legionella pneumophila strain ERS1305867

44.235

95.937

0.424
  pilQ Legionella pneumophila strain Lp02

44.235

95.937

0.424