Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JWV26_RS15830 Genome accession   NZ_CP070505
Coordinates   3458384..3459976 (-) Length   530 a.a.
NCBI ID   WP_206417294.1    Uniprot ID   -
Organism   Ectopseudomonas toyotomiensis strain SM2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3453384..3464976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWV26_RS15800 (JWV26_15800) - 3453411..3454133 (-) 723 WP_206417289.1 PilW family protein -
  JWV26_RS15805 (JWV26_15805) pilV 3454136..3454648 (-) 513 WP_206417290.1 type IV pilus modification protein PilV -
  JWV26_RS15810 (JWV26_15810) - 3454645..3455136 (-) 492 WP_206417291.1 GspH/FimT family pseudopilin -
  JWV26_RS15815 (JWV26_15815) - 3455246..3455755 (-) 510 WP_206417292.1 GspH/FimT family pseudopilin -
  JWV26_RS15820 (JWV26_15820) thiO 3455847..3456941 (+) 1095 WP_206417293.1 glycine oxidase ThiO -
  JWV26_RS15825 (JWV26_15825) pilR 3457041..3458381 (-) 1341 WP_021488143.1 sigma-54-dependent transcriptional regulator Regulator
  JWV26_RS15830 (JWV26_15830) pilS 3458384..3459976 (-) 1593 WP_206417294.1 sensor histidine kinase Regulator
  JWV26_RS15835 (JWV26_15835) - 3459966..3460202 (-) 237 WP_206417295.1 PP0621 family protein -
  JWV26_RS15840 (JWV26_15840) - 3460394..3461386 (-) 993 WP_206417296.1 outer membrane protein assembly factor BamD -
  JWV26_RS15845 (JWV26_15845) rluD 3461525..3462499 (+) 975 WP_072423003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JWV26_RS15850 (JWV26_15850) pgeF 3462496..3463227 (+) 732 WP_206417297.1 peptidoglycan editing factor PgeF -
  JWV26_RS15855 (JWV26_15855) - 3463371..3463973 (+) 603 WP_072423001.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58942.06 Da        Isoelectric Point: 8.6279

>NTDB_id=540333 JWV26_RS15830 WP_206417294.1 3458384..3459976(-) (pilS) [Ectopseudomonas toyotomiensis strain SM2]
MTADISAPGNTQGRRILRLYHFYRLSIGLALILMISSNLDEQLLDVVHIELFRTGSWVYLILNIFIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRVGLLIAAVAAMALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSENLAEQRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHSPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGDQQHILVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAKQHKIGQVWLRLFRDENSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=540333 JWV26_RS15830 WP_206417294.1 3458384..3459976(-) (pilS) [Ectopseudomonas toyotomiensis strain SM2]
GTGACCGCTGATATCAGCGCACCCGGCAACACCCAGGGGCGACGCATCCTCAGGCTTTATCACTTCTATCGCCTGAGCAT
CGGCCTGGCGCTGATACTGATGATCTCCAGCAACCTCGACGAGCAGTTGCTGGACGTCGTGCATATCGAGCTGTTTCGCA
CCGGCAGCTGGGTTTACCTGATCCTCAACATCTTCATCGCCGTACTGGTGCAGAAACCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTCGACGTGATCTTTCTCTCGGCCCTGTTCTACGCCGCCGGCGGCACGCCCAGCGGCATAGGCAACCT
GCTGGTGGTAGCGGTGGCCATCGCCAATATCCTCCTGCGCGGACGCGTTGGTCTGCTGATCGCCGCCGTCGCCGCCATGG
CGCTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGCTGCCGCCGCCCAGTACGTGCAGGCTGGCGCCCTCGGC
GCGCTGTGCTTCGCCGGGGCGCTGTTCATCCAGGGCATCACCCGCCGCCTGCAGGTCAGCGAGAACCTGGCCGAGCAACG
CGCGGCCGACGTGGCCAACCTGGAAGAGCTCAACGCGCAGATCCTGCAGCGCATGCGCACCGGCATCCTGGTACTCGATA
CCCAGCATCGTGTGCTGCTGGCCAACCAGGGCGCGACCCAACTGCTGGGGCGCGGCGAACTGACCGGCAAGATCATCGAC
CCACACAGCCCGGAGCTGGTCAAACGCCTGCAACAGTGGCTGCACAACCCGACCCTGCGCCCGGACAGCCTGCAGGCCCA
GGTCGATGGCCCGGTACTGCAGCCCAGCTTCATTTCCCTGCAACGCGGTGACCAACAGCACATCTTGGTGTTTCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCGCAGCAACTCAAGCTGGCCTCGCTCGGCCGCCTGACCGCCGGTATCGCCCACGAA
ATTCGCAACCCGCTCGGCGCCATCAGCCACGCCGCGCAATTGCTGCAGGAGTCGGAGGATCTGCACGGCCCGGACCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAGCGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCACGCAGGCGCC
AAGCCGAACCGCAACTGCTCGACCTGAAGTACTGGCTACACCGCTTCGCCAGTGAGTTTCGCAGCTCGGCACCGGCTGAC
CGGCAGATCCACCTGGAGACCCAGGGCGGCAGCCTGCAGACACGCATGGACCCGCACCAGCTGACCCAGGTGCTGACCAA
TCTGGTCCAGAACGGCCTGCGCTATAGTGCCAAGCAGCACAAGATCGGCCAGGTCTGGCTGCGCCTTTTCCGCGACGAGA
ACAGCGACCTGCCGGTGCTGGAAATCCTTGACGACGGCCCCGGCGTGCCGCCCGAGCAGGAACAGCACATCTTCGAGCCT
TTCTACACCACCGAGAACAAGGGCACCGGCCTGGGCCTGTATATTTCTCGCGAGCTGTGCCAAGGCAACCAGGCCCGCCT
CGACTATAAACCTCGTGAAGGGGGCGGCAGTTGCTTCCGTATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(201-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.437

97.925

0.66