Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JWV26_RS15825 Genome accession   NZ_CP070505
Coordinates   3457041..3458381 (-) Length   446 a.a.
NCBI ID   WP_021488143.1    Uniprot ID   -
Organism   Ectopseudomonas toyotomiensis strain SM2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452041..3463381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWV26_RS15795 (JWV26_15795) - 3452860..3453414 (-) 555 WP_206417288.1 pilus assembly PilX family protein -
  JWV26_RS15800 (JWV26_15800) - 3453411..3454133 (-) 723 WP_206417289.1 PilW family protein -
  JWV26_RS15805 (JWV26_15805) pilV 3454136..3454648 (-) 513 WP_206417290.1 type IV pilus modification protein PilV -
  JWV26_RS15810 (JWV26_15810) - 3454645..3455136 (-) 492 WP_206417291.1 GspH/FimT family pseudopilin -
  JWV26_RS15815 (JWV26_15815) - 3455246..3455755 (-) 510 WP_206417292.1 GspH/FimT family pseudopilin -
  JWV26_RS15820 (JWV26_15820) thiO 3455847..3456941 (+) 1095 WP_206417293.1 glycine oxidase ThiO -
  JWV26_RS15825 (JWV26_15825) pilR 3457041..3458381 (-) 1341 WP_021488143.1 sigma-54-dependent transcriptional regulator Regulator
  JWV26_RS15830 (JWV26_15830) pilS 3458384..3459976 (-) 1593 WP_206417294.1 sensor histidine kinase Regulator
  JWV26_RS15835 (JWV26_15835) - 3459966..3460202 (-) 237 WP_206417295.1 PP0621 family protein -
  JWV26_RS15840 (JWV26_15840) - 3460394..3461386 (-) 993 WP_206417296.1 outer membrane protein assembly factor BamD -
  JWV26_RS15845 (JWV26_15845) rluD 3461525..3462499 (+) 975 WP_072423003.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JWV26_RS15850 (JWV26_15850) pgeF 3462496..3463227 (+) 732 WP_206417297.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49834.08 Da        Isoelectric Point: 5.6116

>NTDB_id=540332 JWV26_RS15825 WP_021488143.1 3457041..3458381(-) (pilR) [Ectopseudomonas toyotomiensis strain SM2]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRSPEGEETPVDSRLLGDSPPMKSLRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADVM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPGNEGGETSLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=540332 JWV26_RS15825 WP_021488143.1 3457041..3458381(-) (pilR) [Ectopseudomonas toyotomiensis strain SM2]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGTGCCCGCAACGTCAAGGAAGCGCGCGAGTGGCTGGCACGCGAGCCGTTCGACCTGTGCCTGACCG
ATATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTGCAACACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAACCGGTGGA
CCTCGGTCGCCTGCGCGAACTGGTCGCCACCGCCCTGCGCATTCGCTCCCCCGAAGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCACCGATGAAGTCGCTGCGCAAACAGATCCAGAAACTCTCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCACGCCTGATCCATGAGCAGGGCCCGCGCGTCGAACAGCCGTT
CGTACCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGTCACAAGAAAGGCAGTTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCGATGCAGGTCAAACTGCTGCGAGCGATTCAGGAAAAAGCCGTGCGCGCCGTCGGTGGCCAACAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACTCACAAGGATCTGGCAGCCGAAGTTGCTGCTGGCCGTTTCCGCCAGGACCTCTACT
ACCGGCTCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGTGAGCGTCGCGAAGATATCGCTCAATTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACTGGCCTGGCCGCCGCCAAGTTGCATCCCGATGCCTTGGAGAAGCTGAAGAACTATCG
CTTCCCAGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTGTGTGAAGACGACCAGATCACACCCA
GCGACCTGCGCCTGGCCGATGCCAGCGGCCCTGGCAACGAAGGCGGCGAAACCAGCCTGGCGCAGATCGACAACCTCGAG
GATTACCTTGAGGACATCGAACGCAAGCTGATTATGCAGGCACTGGAAGAAACACGTTGGAACCGCACGGCGGCGGCCCA
ACGTCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTAGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.789

100

0.888
  pilR Acinetobacter baumannii strain A118

49.348

100

0.509
  luxO Vibrio cholerae strain A1552

38.117

100

0.381