Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LL046_RS05850 Genome accession   NZ_CP086088
Coordinates   1162264..1163319 (-) Length   351 a.a.
NCBI ID   WP_017864501.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157264..1168319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS05835 (LL046_05815) trmFO 1158950..1160293 (+) 1344 WP_017864499.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LL046_RS05840 (LL046_05820) xerS 1160338..1161408 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  LL046_RS05845 (LL046_05825) - 1161893..1162180 (-) 288 WP_017864500.1 hypothetical protein -
  LL046_RS05850 (LL046_05830) xerS 1162264..1163319 (-) 1056 WP_017864501.1 tyrosine recombinase XerS Machinery gene
  LL046_RS05855 (LL046_05835) - 1164016..1164525 (+) 510 WP_017864502.1 hypothetical protein -
  LL046_RS05860 (LL046_05840) - 1164640..1164987 (-) 348 WP_017864503.1 helix-turn-helix transcriptional regulator -
  LL046_RS05865 (LL046_05845) - 1165305..1165502 (+) 198 WP_017864504.1 hypothetical protein -
  LL046_RS05870 (LL046_05850) - 1165590..1165862 (-) 273 WP_306471740.1 hypothetical protein -
  LL046_RS05875 (LL046_05855) - 1165972..1166391 (-) 420 WP_098403360.1 hypothetical protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40677.61 Da        Isoelectric Point: 9.6964

>NTDB_id=540280 LL046_RS05850 WP_017864501.1 1162264..1163319(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP13A]
MSENHGYRYNVNKLMLEFPYYVNEYIQSKDTIPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNIHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMIRNVSRLIHIRKKCETLHYRAAQLEGKLF
LGDETKAFLEYVENDYEKSISNRAKTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYIKDYFEARSSMKTEVQALFVTDYNQQIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=540280 LL046_RS05850 WP_017864501.1 1162264..1163319(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTATGTCAATGAGTATATCCA
GTCTAAGGACACTATACCGCTGAGTATTGCCTCTATTTACTCTTATTGTCTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATATACATACATCAGCATTAAATCGCAC
CATTGCAGCGATTAAAAGCCTATACAACTATCTGTGTGAACAAACCGAAGATAGTAATGGTAATACGTACATGATTAGAA
ATGTTAGCCGTTTAATTCATATCCGAAAAAAATGCGAAACCTTGCATTACCGTGCGGCTCAACTTGAAGGGAAACTATTT
TTAGGAGATGAAACTAAAGCATTTTTAGAGTATGTTGAAAATGACTATGAAAAGTCTATCAGTAACCGTGCGAAAACAAG
TTTTAAAAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GAATCAATCTCAATGATTTAAATCTTGAAACTGGAAAAGTAAGTGTGATGCGAAAAGAGGGGAAAAAGGACGTAGTCCCG
ATTGCTCATTTTTCACATAAATATATAAAAGATTATTTTGAGGCAAGAAGTAGCATGAAGACTGAGGTACAAGCCTTATT
TGTCACAGATTATAACCAACAAATTAGAAAAATTTCTAATGCTTCGATAAACAAGTTGGTTGCAAAGTATTCTGAAGCCT
ATAAAGTCCGTGTGACACCTCATACACTAAGGCATACTTTTGCAACAAGGCTTTATAATGTCAGTCATTCACAAGTCCTT
GTCAGCAATCAATTGGGGCATTCCTCAACTAAGCCTACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
TTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(175-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.821

98.86

0.453