Detailed information NTG0540279

Bioinformatically predicted

Overview

• Name: xerS
• Type: Machinery gene
• Locus tag: LL046_RS05840
• Genome accession: NZ_CP086088
• Coordinates: 1160338..1161408 (-)
• Length: 356 a.a.
• NCBI ID: WP_003131037.1
• Uniprot ID: Q9CG78
• Organism: Lactococcus lactis subsp. lactis strain EIP13A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1155338..1166408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL046_RS05825 (LL046_05805)	dprA	1155636..1156484 (+)	849	WP_012897825.1	DNA-processing protein DprA	Machinery gene
LL046_RS05830 (LL046_05810)	topA	1156746..1158872 (+)	2127	WP_240819054.1	type I DNA topoisomerase	-
LL046_RS05835 (LL046_05815)	trmFO	1158950..1160293 (+)	1344	WP_017864499.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
LL046_RS05840 (LL046_05820)	xerS	1160338..1161408 (-)	1071	WP_003131037.1	tyrosine recombinase XerS	Machinery gene
LL046_RS05845 (LL046_05825)	-	1161893..1162180 (-)	288	WP_017864500.1	hypothetical protein	-
LL046_RS05850 (LL046_05830)	xerS	1162264..1163319 (-)	1056	WP_017864501.1	tyrosine recombinase XerS	Machinery gene
LL046_RS05855 (LL046_05835)	-	1164016..1164525 (+)	510	WP_017864502.1	hypothetical protein	-
LL046_RS05860 (LL046_05840)	-	1164640..1164987 (-)	348	WP_017864503.1	helix-turn-helix transcriptional regulator	-
LL046_RS05865 (LL046_05845)	-	1165305..1165502 (+)	198	WP_017864504.1	hypothetical protein	-
LL046_RS05870 (LL046_05850)	-	1165590..1165862 (-)	273	WP_306471740.1	hypothetical protein	-
LL046_RS05875 (LL046_05855)	-	1165972..1166391 (-)	420	WP_098403360.1	hypothetical protein	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 41397.21 Da
• Isoelectric Point: 9.6568

>NTDB_id=540279 LL046_RS05840 WP_003131037.1 1160338..1161408(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP13A]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide

• Length: 1071 bp

>NTDB_id=540279 LL046_RS05840 WP_003131037.1 1160338..1161408(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

• Phage integrase family (Phage_integrase) (182-344)

• Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4) (33-122)

3D structure

• AlphaFold DB: Q9CG78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xerS	Streptococcus pneumoniae R6	76.685	100	0.767