Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JSQ81_RS12255 Genome accession   NZ_CP070502
Coordinates   2357519..2358040 (-) Length   173 a.a.
NCBI ID   WP_212604349.1    Uniprot ID   A0A975Q903
Organism   Sporosarcina sp. Marseille-Q4063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2352519..2363040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ81_RS12235 (JSQ81_12235) rplI 2353617..2354066 (-) 450 WP_212604346.1 50S ribosomal protein L9 -
  JSQ81_RS12240 (JSQ81_12240) - 2354072..2356045 (-) 1974 WP_212604347.1 DHH family phosphoesterase -
  JSQ81_RS12245 (JSQ81_12245) - 2356051..2356992 (-) 942 WP_212604348.1 YybS family protein -
  JSQ81_RS12250 (JSQ81_12250) rpsR 2357211..2357447 (-) 237 WP_172370283.1 30S ribosomal protein S18 -
  JSQ81_RS12255 (JSQ81_12255) ssbA 2357519..2358040 (-) 522 WP_212604349.1 single-stranded DNA-binding protein Machinery gene
  JSQ81_RS12260 (JSQ81_12260) rpsF 2358101..2358388 (-) 288 WP_210471434.1 30S ribosomal protein S6 -
  JSQ81_RS12265 (JSQ81_12265) - 2358535..2359113 (+) 579 WP_212604350.1 DUF3267 domain-containing protein -
  JSQ81_RS12270 (JSQ81_12270) ychF 2359137..2360237 (-) 1101 WP_212604351.1 redox-regulated ATPase YchF -
  JSQ81_RS12275 (JSQ81_12275) - 2360339..2360533 (-) 195 WP_210471437.1 DUF951 domain-containing protein -
  JSQ81_RS12280 (JSQ81_12280) - 2360523..2361413 (-) 891 WP_249336533.1 mechanosensitive ion channel family protein -
  JSQ81_RS12285 (JSQ81_12285) yyaC 2361486..2362043 (+) 558 WP_212604352.1 spore protease YyaC -
  JSQ81_RS12290 (JSQ81_12290) - 2362038..2362742 (-) 705 WP_212604353.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19006.77 Da        Isoelectric Point: 4.9468

>NTDB_id=540267 JSQ81_RS12255 WP_212604349.1 2357519..2358040(-) (ssbA) [Sporosarcina sp. Marseille-Q4063]
MINSVVLVGRLTKDPELKYTQGGVAVTRFTLAVNRPFTNQQGQREADFVNCVTWRKQAENTANFLRKGSLTGIEGRIQTS
NFEGKDGNRVFMTEVVADSVQFLEPRGANAGRSEEGSNAPYQGASFQGGAQQQQPAYQQSNHQPNQQNYTRTNDDPFSTG
GGPIEVSDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=540267 JSQ81_RS12255 WP_212604349.1 2357519..2358040(-) (ssbA) [Sporosarcina sp. Marseille-Q4063]
ATGATTAATAGTGTCGTTTTAGTTGGCCGCTTAACAAAAGATCCTGAGCTTAAGTATACACAAGGTGGTGTGGCGGTCAC
TCGTTTCACACTCGCTGTGAACAGACCATTCACTAACCAACAAGGTCAGCGTGAAGCTGATTTCGTTAACTGTGTAACTT
GGCGCAAGCAAGCAGAAAACACGGCGAACTTTTTAAGGAAAGGTAGCCTTACTGGAATTGAAGGTCGTATACAGACGAGT
AACTTTGAAGGTAAGGATGGCAATCGTGTCTTTATGACAGAGGTTGTCGCGGATAGCGTACAATTCCTTGAACCGCGCGG
TGCGAATGCTGGAAGGTCCGAAGAAGGTTCGAATGCACCTTATCAAGGAGCATCGTTCCAAGGTGGCGCTCAACAACAAC
AGCCAGCGTATCAGCAATCGAATCACCAACCAAATCAGCAAAACTATACACGTACAAACGATGATCCATTTTCGACAGGC
GGAGGTCCGATAGAAGTTTCGGACGACGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.595
  ssb Latilactobacillus sakei subsp. sakei 23K

50.289

100

0.503