Detailed information NTG0540215

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LL045_RS10610
• Genome accession: NZ_CP086083
• Coordinates: 2183128..2184204 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain EIP20A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2178128..2189204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL045_RS10585 (LL045_10560)	pgsA	2178235..2178807 (-)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LL045_RS10590 (LL045_10565)	-	2178848..2179744 (-)	897	WP_038602123.1	RodZ family helix-turn-helix domain-containing protein	-
LL045_RS10595 (LL045_10570)	yfmH	2180009..2181292 (-)	1284	WP_029344435.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LL045_RS10600 (LL045_10575)	yfmF	2181282..2182568 (-)	1287	WP_173402266.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LL045_RS10605 (LL045_10580)	yaaA	2182766..2183128 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
LL045_RS10610 (LL045_10585)	recF	2183128..2184204 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LL045_RS10615 (LL045_10590)	-	2184248..2184616 (-)	369	WP_038602126.1	carboxymuconolactone decarboxylase family protein	-
LL045_RS10620 (LL045_10595)	-	2184693..2185070 (+)	378	WP_038602130.1	MerR family transcriptional regulator	-
LL045_RS10625 (LL045_10600)	-	2185083..2186018 (-)	936	WP_038602135.1	alpha/beta hydrolase	-
LL045_RS10630 (LL045_10605)	galE	2186139..2187119 (-)	981	WP_394530173.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=540215 LL045_RS10610 WP_010906242.1 2183128..2184204(+) (recF) [Lactococcus lactis subsp. lactis strain EIP20A]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=540215 LL045_RS10610 WP_010906242.1 2183128..2184204(+) (recF) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAACGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAAGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGACAAACTTGAAGTTCATGCAAAAAAGATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCCGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACGTTTATAACTACAACTACTCTTGATCATCTCAAAAATTTGCCTGAGAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAGGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447