Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LL045_RS06205 Genome accession   NZ_CP086083
Coordinates   1273597..1274652 (-) Length   351 a.a.
NCBI ID   WP_394529822.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268597..1279652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS06190 (LL045_06175) trmFO 1270287..1271630 (+) 1344 WP_098393836.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LL045_RS06195 (LL045_06180) xerS 1271675..1272745 (-) 1071 WP_098393835.1 tyrosine recombinase XerS Machinery gene
  LL045_RS06200 (LL045_06185) - 1273226..1273513 (-) 288 WP_394529820.1 hypothetical protein -
  LL045_RS06205 (LL045_06190) xerS 1273597..1274652 (-) 1056 WP_394529822.1 tyrosine recombinase XerS Machinery gene
  LL045_RS06210 (LL045_06195) - 1275462..1275665 (-) 204 WP_023189252.1 hypothetical protein -
  LL045_RS06215 (LL045_06200) arsB 1275674..1276726 (-) 1053 WP_394529824.1 ACR3 family arsenite efflux transporter -
  LL045_RS06220 (LL045_06205) - 1276742..1278403 (-) 1662 WP_394529826.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40569.26 Da        Isoelectric Point: 9.5152

>NTDB_id=540189 LL045_RS06205 WP_394529822.1 1273597..1274652(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP20A]
MSENHGYRYNVNKLMLEFPYYVNEFIHSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEDGNTYMIRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGNETKAFLDFVEHDYEKSISNRARTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYISDYFEARSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTLRNTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=540189 LL045_RS06205 WP_394529822.1 1273597..1274652(-) (xerS) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCTTACTACGTCAATGAGTTTATCCA
TTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATCTACTCTTACTGCTTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
CATTGCAGCGATTAAGAGTTTATATAATTATCTTTGTGAACAAACTGAGGATGAAGACGGAAATACATACATGATACGAA
ATGTTAGTCGTTTAATTCATATCCGAAAAAAAAGCGAAACTCTGCATTATCGTGCAGCACAGCTGGAAGGTAAACTATTT
CTTGGAAATGAAACCAAAGCCTTTTTAGATTTTGTTGAACATGACTATGAAAAGTCTATCAGTAACCGTGCAAGAACAAG
TTTTAAGAAAAATAAAGTCAGAGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGCTGTGCGGAACTTGTAG
GGATCAATCTTAACGATTTAAACCTTGAAACTGGGAAAGTAAGTGTGATGCGGAAAGAAGGCAAGAAAGATGTAGTACCT
ATTGCTCATTTTTCGCATAAGTATATATCAGATTATTTTGAGGCAAGAAGTAGCTTAAATACTGATGTAGAAGCCTTATT
TATCACGGACTATAACCAAACAATCAGAAAAATTTCTAATGCTTCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTCCGAGTGACACCTCATACACTAAGGAATACATTCGCAACAAGACTTTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAACCAATTAGGACACTCTTCAACCAAACCAACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
TTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(175-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

44.571

99.715

0.444