Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LL045_RS00375 Genome accession   NZ_CP086083
Coordinates   74990..75775 (-) Length   261 a.a.
NCBI ID   WP_058205585.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 69990..80775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS00350 (LL045_00350) - 70591..71760 (+) 1170 WP_394530270.1 ring-cleaving dioxygenase -
  LL045_RS00355 (LL045_00355) - 71771..72361 (+) 591 WP_394530271.1 flavin reductase family protein -
  LL045_RS00360 (LL045_00360) rpmG 72440..72589 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LL045_RS00365 (LL045_00365) rpmF 72619..72792 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LL045_RS00370 (LL045_00370) - 73157..74938 (+) 1782 WP_394530272.1 heavy metal translocating P-type ATPase -
  LL045_RS00375 (LL045_00375) spo0J 74990..75775 (-) 786 WP_058205585.1 ParB/RepB/Spo0J family partition protein Regulator
  LL045_RS00380 (LL045_00380) rarA 75830..77089 (-) 1260 WP_195362647.1 replication-associated recombination protein A Machinery gene
  LL045_RS00385 (LL045_00385) - 77133..77621 (-) 489 WP_394530273.1 GNAT family N-acetyltransferase -
  LL045_RS00390 (LL045_00390) - 77773..78240 (+) 468 WP_058219487.1 DUF3013 family protein -
  LL045_RS00395 (LL045_00395) - 78270..79823 (+) 1554 WP_394530274.1 ABC-F family ATP-binding cassette domain-containing protein -
  LL045_RS00400 (LL045_00400) - 79932..80216 (+) 285 WP_010905114.1 hypothetical protein -
  LL045_RS00405 (LL045_00405) - 80254..80742 (+) 489 WP_394530275.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29741.56 Da        Isoelectric Point: 9.3858

>NTDB_id=540154 LL045_RS00375 WP_058205585.1 74990..75775(-) (spo0J) [Lactococcus lactis subsp. lactis strain EIP20A]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSNLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=540154 LL045_RS00375 WP_058205585.1 74990..75775(-) (spo0J) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGCGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAGATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTCGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAACTTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

47.266

98.084

0.464