Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LL045_RS00380 Genome accession   NZ_CP086083
Coordinates   75830..77089 (-) Length   419 a.a.
NCBI ID   WP_195362647.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70830..82089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS00355 (LL045_00355) - 71771..72361 (+) 591 WP_394530271.1 flavin reductase family protein -
  LL045_RS00360 (LL045_00360) rpmG 72440..72589 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LL045_RS00365 (LL045_00365) rpmF 72619..72792 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LL045_RS00370 (LL045_00370) - 73157..74938 (+) 1782 WP_394530272.1 heavy metal translocating P-type ATPase -
  LL045_RS00375 (LL045_00375) spo0J 74990..75775 (-) 786 WP_058205585.1 ParB/RepB/Spo0J family partition protein Regulator
  LL045_RS00380 (LL045_00380) rarA 75830..77089 (-) 1260 WP_195362647.1 replication-associated recombination protein A Machinery gene
  LL045_RS00385 (LL045_00385) - 77133..77621 (-) 489 WP_394530273.1 GNAT family N-acetyltransferase -
  LL045_RS00390 (LL045_00390) - 77773..78240 (+) 468 WP_058219487.1 DUF3013 family protein -
  LL045_RS00395 (LL045_00395) - 78270..79823 (+) 1554 WP_394530274.1 ABC-F family ATP-binding cassette domain-containing protein -
  LL045_RS00400 (LL045_00400) - 79932..80216 (+) 285 WP_010905114.1 hypothetical protein -
  LL045_RS00405 (LL045_00405) - 80254..80742 (+) 489 WP_394530275.1 YdeI/OmpD-associated family protein -
  LL045_RS00410 (LL045_00410) prmA 80759..81712 (+) 954 WP_038598443.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46820.18 Da        Isoelectric Point: 5.8864

>NTDB_id=540155 LL045_RS00380 WP_195362647.1 75830..77089(-) (rarA) [Lactococcus lactis subsp. lactis strain EIP20A]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETHLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIEDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLSRRLTVMAYEDIGLANPDAALHTVLALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPAHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=540155 LL045_RS00380 WP_195362647.1 75830..77089(-) (rarA) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGCACAAAATCTTGCAAGACGAATGAGACCCCGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCACCTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGATACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCAAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAGGATTTAGAATTTGCTGTAAAC
CTTAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGAAGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACACCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAATGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTATCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
TAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCAGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
GGCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGACTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.005

100

0.594