Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JQX68_RS12670 Genome accession   NZ_CP070483
Coordinates   2500827..2501897 (-) Length   356 a.a.
NCBI ID   WP_040082636.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2495827..2506897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS12625 (JQX68_12625) tapA 2496315..2497070 (-) 756 WP_147772231.1 amyloid fiber anchoring/assembly protein TapA -
  JQX68_RS12630 (JQX68_12630) - 2497342..2497668 (+) 327 WP_014664589.1 YqzG/YhdC family protein -
  JQX68_RS12635 (JQX68_12635) - 2497709..2497888 (-) 180 WP_014480252.1 YqzE family protein -
  JQX68_RS12640 (JQX68_12640) comGG 2497960..2498334 (-) 375 WP_147772232.1 competence type IV pilus minor pilin ComGG Machinery gene
  JQX68_RS12645 (JQX68_12645) comGF 2498335..2498715 (-) 381 WP_014664591.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQX68_RS12650 (JQX68_12650) comGE 2498741..2499088 (-) 348 WP_147772233.1 competence type IV pilus minor pilin ComGE Machinery gene
  JQX68_RS12655 (JQX68_12655) comGD 2499072..2499503 (-) 432 WP_147772234.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQX68_RS12660 (JQX68_12660) comGC 2499493..2499789 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  JQX68_RS12665 (JQX68_12665) comGB 2499803..2500840 (-) 1038 WP_147772235.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQX68_RS12670 (JQX68_12670) comGA 2500827..2501897 (-) 1071 WP_040082636.1 competence protein ComGA Machinery gene
  JQX68_RS12675 (JQX68_12675) - 2502110..2502520 (-) 411 WP_147772236.1 CBS domain-containing protein -
  JQX68_RS12680 (JQX68_12680) corA 2502583..2503536 (-) 954 WP_103030653.1 magnesium transporter CorA -
  JQX68_RS12685 (JQX68_12685) - 2503679..2505007 (+) 1329 WP_069150775.1 hemolysin family protein -
  JQX68_RS12690 (JQX68_12690) rsbRD 2505057..2505893 (-) 837 WP_136654215.1 RsbT co-antagonist protein RsbRD -
  JQX68_RS12700 (JQX68_12700) mgsR 2506115..2506495 (-) 381 WP_014664601.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40485.71 Da        Isoelectric Point: 9.1812

>NTDB_id=540021 JQX68_RS12670 WP_040082636.1 2500827..2501897(-) (comGA) [Bacillus sp. LJBS06]
MDSIEKISKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTIIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=540021 JQX68_RS12670 WP_040082636.1 2500827..2501897(-) (comGA) [Bacillus sp. LJBS06]
TTGGATTCAATAGAAAAGATAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGAGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGAATATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCTGCAATGGACATAGGGGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTTCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATTGATAAACTGTCGTTATTTCCAAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAC
GCAAAAAAACACTTTAATCGAAATATTGTTACATTAGAGGACCCTGTTGAAACTAGGGACGAAGACGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAGGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGGGATGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTGCTGACCAGTCTTCAT
ACGAGAGATGCAAAGGGCGCAATTTACAGGCTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACCATTATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGTCCATTTTGTGAAAACGGATGTTCATCAGTATATTGCCGTCAGTCAC
GAAATACCAGAAGAGCTAGCGTTTATGAGCTTCTTTATGGGAAAAACCTTCAGCAATGTATACAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.157

100

0.992