Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JQX68_RS12425 Genome accession   NZ_CP070483
Coordinates   2462380..2464110 (-) Length   576 a.a.
NCBI ID   WP_147772224.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2457380..2469110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS12395 (JQX68_12395) - 2457381..2457677 (-) 297 WP_014664550.1 hypothetical protein -
  JQX68_RS12400 (JQX68_12400) - 2457981..2458115 (+) 135 WP_014664551.1 hypothetical protein -
  JQX68_RS12405 (JQX68_12405) - 2458188..2459306 (+) 1119 WP_041521374.1 NADH-dependent flavin oxidoreductase -
  JQX68_RS12410 (JQX68_12410) - 2459522..2459701 (-) 180 WP_014664554.1 hypothetical protein -
  JQX68_RS12415 (JQX68_12415) spo0A 2459847..2460650 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  JQX68_RS12420 (JQX68_12420) spoIVB 2460926..2462206 (-) 1281 WP_069149849.1 SpoIVB peptidase -
  JQX68_RS12425 (JQX68_12425) recN 2462380..2464110 (-) 1731 WP_147772224.1 DNA repair protein RecN Machinery gene
  JQX68_RS12430 (JQX68_12430) argR 2464147..2464596 (-) 450 WP_003230265.1 arginine repressor ArgR -
  JQX68_RS12435 (JQX68_12435) - 2464693..2465538 (-) 846 WP_128422311.1 TlyA family RNA methyltransferase -
  JQX68_RS12440 (JQX68_12440) dxs 2465535..2467436 (-) 1902 WP_069839471.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JQX68_RS12445 (JQX68_12445) - 2467612..2468502 (-) 891 WP_014664560.1 polyprenyl synthetase family protein -
  JQX68_RS12450 (JQX68_12450) - 2468492..2468746 (-) 255 WP_147772225.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64678.52 Da        Isoelectric Point: 4.7389

>NTDB_id=540012 JQX68_RS12425 WP_147772224.1 2462380..2464110(-) (recN) [Bacillus sp. LJBS06]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIIMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLEINEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QSGLDWVGMASAQLEDISNINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAENVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKI
RQASRNEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKIVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=540012 JQX68_RS12425 WP_147772224.1 2462380..2464110(-) (recN) [Bacillus sp. LJBS06]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATTATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCAGAACTTGAAGGGCTGTTTCTTTTGGAGAGCGGCCATCCCGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCATCATGAGAAGAGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTCTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTCCAA
GCGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCAGCAAAGCTTGAGATCAACGAAGATGAACAGCTTC
AAGAAGAGCGTCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAATGCGCTTCGCAGTGAA
CAGAGCGGATTGGACTGGGTCGGAATGGCATCAGCCCAGCTTGAAGATATATCTAATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTGCTTGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGGCTCAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTC
GAGGACATTTTGGAATACGCTTCTAAAATTGAAGAAGAAATTGACCAAATTGAAAACAGGGACAGCCACCTACAAAGCCT
GAAAAAGGAGCTTGACTCCGTTGGCAAGGATGTCGCAGTGGAAGCGGAAAATGTTTCTCAAATCCGGAAAACATGGGCGA
AAAAACTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAATTCAAAATC
AGACAAGCGTCACGCAATGAAGAGGCACCGGTTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATCGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTTGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTTTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTTTCTAAGCAGGAAAAAATAGTGGAAATCGGACGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974