Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JQX68_RS12415 Genome accession   NZ_CP070483
Coordinates   2459847..2460650 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454847..2465650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS12385 (JQX68_12385) - 2455932..2456663 (-) 732 WP_147772223.1 glycerophosphodiester phosphodiesterase -
  JQX68_RS12390 (JQX68_12390) - 2456741..2457361 (-) 621 WP_081483628.1 N-acetylmuramoyl-L-alanine amidase -
  JQX68_RS12395 (JQX68_12395) - 2457381..2457677 (-) 297 WP_014664550.1 hypothetical protein -
  JQX68_RS12400 (JQX68_12400) - 2457981..2458115 (+) 135 WP_014664551.1 hypothetical protein -
  JQX68_RS12405 (JQX68_12405) - 2458188..2459306 (+) 1119 WP_041521374.1 NADH-dependent flavin oxidoreductase -
  JQX68_RS12410 (JQX68_12410) - 2459522..2459701 (-) 180 WP_014664554.1 hypothetical protein -
  JQX68_RS12415 (JQX68_12415) spo0A 2459847..2460650 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  JQX68_RS12420 (JQX68_12420) spoIVB 2460926..2462206 (-) 1281 WP_069149849.1 SpoIVB peptidase -
  JQX68_RS12425 (JQX68_12425) recN 2462380..2464110 (-) 1731 WP_147772224.1 DNA repair protein RecN Machinery gene
  JQX68_RS12430 (JQX68_12430) argR 2464147..2464596 (-) 450 WP_003230265.1 arginine repressor ArgR -
  JQX68_RS12435 (JQX68_12435) - 2464693..2465538 (-) 846 WP_128422311.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=540011 JQX68_RS12415 WP_003226427.1 2459847..2460650(-) (spo0A) [Bacillus sp. LJBS06]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=540011 JQX68_RS12415 WP_003226427.1 2459847..2460650(-) (spo0A) [Bacillus sp. LJBS06]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTGGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATCATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGGGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGTGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAACTCAGAGTTCATTGCGATGGTTGCGGATAAGCTTAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1