Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JQX68_RS09035 Genome accession   NZ_CP070483
Coordinates   1748804..1749697 (+) Length   297 a.a.
NCBI ID   WP_205440626.1    Uniprot ID   -
Organism   Bacillus sp. LJBS06     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1743804..1754697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX68_RS09015 (JQX68_09015) - 1744475..1746202 (+) 1728 WP_205440625.1 hypothetical protein -
  JQX68_RS09020 (JQX68_09020) - 1746199..1746480 (+) 282 WP_014663956.1 FlhB-like flagellar biosynthesis protein -
  JQX68_RS09025 (JQX68_09025) sucC 1746655..1747812 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  JQX68_RS09030 (JQX68_09030) sucD 1747841..1748743 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  JQX68_RS09035 (JQX68_09035) dprA 1748804..1749697 (+) 894 WP_205440626.1 DNA-processing protein DprA Machinery gene
  JQX68_RS09040 (JQX68_09040) topA 1749885..1751960 (+) 2076 WP_014663959.1 type I DNA topoisomerase -
  JQX68_RS09045 (JQX68_09045) trmFO 1752036..1753343 (+) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JQX68_RS09050 (JQX68_09050) xerC 1753411..1754325 (+) 915 WP_069149592.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33011.35 Da        Isoelectric Point: 9.9819

>NTDB_id=540006 JQX68_RS09035 WP_205440626.1 1748804..1749697(+) (dprA) [Bacillus sp. LJBS06]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQMVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFSMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=540006 JQX68_RS09035 WP_205440626.1 1748804..1749697(+) (dprA) [Bacillus sp. LJBS06]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAATGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGCTCTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAATTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCTCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGCGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.613

100

0.946
  dprA Legionella pneumophila strain ERS1305867

38.516

95.286

0.367
  dprA Lactococcus lactis subsp. cremoris KW2

39.13

92.929

0.364