Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LGV80_RS16800 Genome accession   NZ_CP086018
Coordinates   3517882..3518514 (+) Length   210 a.a.
NCBI ID   WP_003278556.1    Uniprot ID   Q8Y2P3
Organism   Ralstonia pseudosolanacearum strain RS642     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3512882..3523514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV80_RS16785 (LGV80_16765) - 3513119..3514159 (+) 1041 WP_016724199.1 homocysteine S-methyltransferase family protein -
  LGV80_RS16790 (LGV80_16770) metH 3514228..3516945 (+) 2718 WP_016726557.1 methionine synthase -
  LGV80_RS16795 (LGV80_16775) - 3517191..3517577 (+) 387 WP_247318490.1 hypothetical protein -
  LGV80_RS16800 (LGV80_16780) letA 3517882..3518514 (+) 633 WP_003278556.1 response regulator transcription factor Regulator
  LGV80_RS16805 (LGV80_16785) - 3518629..3519069 (+) 441 WP_011000257.1 response regulator -
  LGV80_RS16810 (LGV80_16790) - 3519140..3519280 (+) 141 WP_003264564.1 entericidin A/B family lipoprotein -
  LGV80_RS16815 (LGV80_16795) - 3519343..3520767 (-) 1425 WP_011000256.1 CHASE3 domain-containing protein -
  LGV80_RS16820 (LGV80_16800) - 3521245..3521562 (-) 318 WP_011000255.1 DUF1840 domain-containing protein -
  LGV80_RS16825 (LGV80_16805) - 3521595..3521732 (-) 138 WP_023470043.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23476.01 Da        Isoelectric Point: 5.4040

>NTDB_id=539956 LGV80_RS16800 WP_003278556.1 3517882..3518514(+) (letA) [Ralstonia pseudosolanacearum strain RS642]
MIRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRNGIDTLKLVRQRHPDLPVLI
LSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQTLSKREFQIFCKL
ARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLVE

Nucleotide


Download         Length: 633 bp        

>NTDB_id=539956 LGV80_RS16800 WP_003278556.1 3517882..3518514(+) (letA) [Ralstonia pseudosolanacearum strain RS642]
ATGATTCGCGTCCTGATTGCGGACGACCATGAAATCGTCCGCGCCGGTCTTCGGCAGTTCCTGTCGGAAGAGCGGGACAT
CGAAGTGGCGGGGGAGGCGGCCAGCGGGGAAGAGGTGATGGAGCAACTGCGCACCGGAACCTTCGACGTGGTGGTTCTGG
ACATCTCCATGCCCGACCGCAACGGCATCGACACGCTCAAGCTGGTACGGCAGCGTCACCCGGACCTGCCGGTGCTGATC
CTGTCGACCTTTCCGGAAGACCAGTACGCGATCAACCTGATCCGGGCCGGCGCCTCGGGCTACCTGACCAAGGAAAGCGC
GCCGGACGAACTCGTCAAGGCCATCCGCACCGTCTCGCAAGGGCGCCGTTACGTGAGCCCGACGGTCGCCGAACTGCTGA
TCGGCGGGCTGGAGAAGCCGACCGACCAGCCGCTGCACCAGACCCTGTCCAAGCGCGAATTCCAGATCTTCTGCAAGCTG
GCGCGTGGCCAGTCGGTCTCGATCATCGCCGAAGAGTTGTTCCTGAGCGTCAAGACGGTCAGCACGTACCGCACCCGCAT
CCTGGAAAAGATGGGCATGAAGTCGAACGCCGACCTGACGTATTACGCCATCAAGAACGGACTGGTGGAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.863

100

0.39
  letA Legionella pneumophila strain ERS1305867

38.863

100

0.39