Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LKM46_RS20080 Genome accession   NZ_CP086016
Coordinates   4223846..4224490 (-) Length   214 a.a.
NCBI ID   WP_042163510.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4218846..4229490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS20055 (LKM46_20055) - 4219858..4220391 (-) 534 WP_003099002.1 ProQ/FINO family protein -
  LKM46_RS20060 (LKM46_20060) - 4220482..4221047 (-) 566 Protein_3986 response regulator -
  LKM46_RS20070 (LKM46_20070) pgsA 4221425..4221985 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LKM46_RS20075 (LKM46_20075) uvrC 4222019..4223845 (-) 1827 WP_003162160.1 excinuclease ABC subunit UvrC -
  LKM46_RS20080 (LKM46_20080) letA 4223846..4224490 (-) 645 WP_042163510.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  LKM46_RS20085 (LKM46_20085) pqsH 4224832..4225980 (-) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  LKM46_RS20090 (LKM46_20090) - 4226597..4227625 (+) 1029 WP_042163507.1 AraC family transcriptional regulator -
  LKM46_RS20095 (LKM46_20095) - 4227641..4228855 (-) 1215 WP_033973499.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=539848 LKM46_RS20080 WP_042163510.1 4223846..4224490(-) (letA) [Pseudomonas aeruginosa isolate KB-PA_3]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRIMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=539848 LKM46_RS20080 WP_042163510.1 4223846..4224490(-) (letA) [Pseudomonas aeruginosa isolate KB-PA_3]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCATCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537