Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LKM46_RS00180 Genome accession   NZ_CP086016
Coordinates   37783..38406 (-) Length   207 a.a.
NCBI ID   WP_042169883.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 32783..43406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS00155 (LKM46_00155) - 33565..34488 (-) 924 WP_033968198.1 choline ABC transporter substrate-binding protein -
  LKM46_RS00160 (LKM46_00160) betC 34505..36016 (-) 1512 WP_042169887.1 choline-sulfatase -
  LKM46_RS00165 (LKM46_00165) - 36129..37043 (+) 915 WP_033968196.1 choline sulfate utilization transcriptional regulator -
  LKM46_RS00170 (LKM46_00170) - 37054..37431 (+) 378 WP_024918132.1 DOPA 4,5-dioxygenase family protein -
  LKM46_RS00175 (LKM46_00175) - 37410..37775 (-) 366 WP_033968195.1 Hpt domain-containing protein -
  LKM46_RS00180 (LKM46_00180) letA 37783..38406 (-) 624 WP_042169883.1 response regulator transcription factor Regulator
  LKM46_RS00185 (LKM46_00185) trpA 38592..39398 (-) 807 WP_003120671.1 tryptophan synthase subunit alpha -
  LKM46_RS00190 (LKM46_00190) trpB 39395..40603 (-) 1209 WP_023110886.1 tryptophan synthase subunit beta -
  LKM46_RS00195 (LKM46_00195) trpI 40707..41594 (+) 888 WP_042169879.1 trpBA operon transcriptional activator TrpI -
  LKM46_RS00200 (LKM46_00200) - 41695..41910 (+) 216 WP_003097345.1 dodecin -
  LKM46_RS00205 (LKM46_00205) - 42094..42321 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22844.69 Da        Isoelectric Point: 10.1491

>NTDB_id=539797 LKM46_RS00180 WP_042169883.1 37783..38406(-) (letA) [Pseudomonas aeruginosa isolate KB-PA_3]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIALQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=539797 LKM46_RS00180 WP_042169883.1 37783..38406(-) (letA) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGTAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCTGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-201)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362