Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GGS_RS02870 Genome accession   NC_018712
Coordinates   554690..555499 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 549690..560499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS02845 (GGS_0540) - 550062..550763 (-) 702 WP_015016780.1 amino acid ABC transporter permease -
  GGS_RS02850 (GGS_0541) - 550777..551577 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  GGS_RS02855 (GGS_0542) - 551577..552371 (-) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  GGS_RS02860 (GGS_0543) vicR 552630..553340 (+) 711 WP_012766682.1 response regulator YycF Regulator
  GGS_RS02865 (GGS_0544) vicK 553333..554686 (+) 1354 Protein_527 cell wall metabolism sensor histidine kinase VicK -
  GGS_RS02870 (GGS_0545) vicX 554690..555499 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  GGS_RS02875 (GGS_0546) rnc 556257..556949 (+) 693 WP_003057240.1 ribonuclease III -
  GGS_RS02880 (GGS_0547) smc 556950..560495 (+) 3546 WP_015016783.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=53956 GGS_RS02870 WP_003059746.1 554690..555499(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=53956 GGS_RS02870 WP_003059746.1 554690..555499(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment