Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   JVB21_RS08700 Genome accession   NZ_CP070381
Coordinates   1739762..1740253 (+) Length   163 a.a.
NCBI ID   WP_075526248.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734762..1745253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS08685 (JVB21_08685) rpsB 1735697..1736464 (+) 768 WP_075526251.1 30S ribosomal protein S2 -
  JVB21_RS08690 (JVB21_08690) tsf 1736578..1737606 (+) 1029 WP_200407795.1 translation elongation factor Ts -
  JVB21_RS08695 (JVB21_08695) ezrA 1737786..1739516 (+) 1731 WP_205271928.1 septation ring formation regulator EzrA -
  JVB21_RS08700 (JVB21_08700) comX 1739762..1740253 (+) 492 WP_075526248.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19744.65 Da        Isoelectric Point: 6.3614

>NTDB_id=539558 JVB21_RS08700 WP_075526248.1 1739762..1740253(+) (comX) [Lactococcus taiwanensis strain K_LL001]
MDDIQEKYGLEFNELFSEMRPIIYKLMKQLHINTWDYDDYFQEGMITLHELLQKITNLDHVHTKFKVAYHQHLIDEIRHI
KARKRGFDQLHPINVYDCADWIGSNLATPESEIVFNHLLEEVYDKLSTHYKELLVKQMHGEHLTRMQKYRLKEKIKAILF
DED

Nucleotide


Download         Length: 492 bp        

>NTDB_id=539558 JVB21_RS08700 WP_075526248.1 1739762..1740253(+) (comX) [Lactococcus taiwanensis strain K_LL001]
ATGGATGACATTCAAGAAAAATACGGTTTAGAATTCAACGAATTATTCTCAGAGATGCGGCCGATAATTTATAAATTGAT
GAAGCAATTGCACATCAACACATGGGATTACGATGATTACTTCCAAGAGGGAATGATTACACTACACGAATTGCTACAGA
AAATTACAAATTTAGATCATGTACATACGAAATTTAAAGTGGCTTACCATCAGCACTTAATTGACGAAATTCGCCATATT
AAAGCACGAAAAAGAGGTTTTGATCAGCTCCATCCGATCAATGTTTATGACTGCGCAGATTGGATCGGCTCAAACCTTGC
TACACCTGAAAGCGAGATAGTTTTCAACCATCTACTAGAAGAAGTTTATGATAAACTTTCAACACACTATAAAGAACTGT
TGGTAAAGCAAATGCATGGGGAGCATCTTACGAGAATGCAGAAGTATCGTTTAAAGGAAAAAATTAAAGCGATTTTATTT
GATGAAGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

60.131

93.865

0.564
  comX Lactococcus lactis subsp. lactis strain DGCC12653

58.824

93.865

0.552