Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SPYOHK_RS05425 Genome accession   NZ_AFRY01000001
Coordinates   744728..745324 (+) Length   198 a.a.
NCBI ID   WP_002989144.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739728..750324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS05450 (SPYOHK_03630) - 739836..740771 (-) 936 WP_002989136.1 dihydroorotate oxidase -
  SPYOHK_RS05445 (SPYOHK_03635) - 741010..741705 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  SPYOHK_RS05440 (SPYOHK_03640) - 741813..742334 (+) 522 WP_002983930.1 transcription repressor NadR -
  SPYOHK_RS05435 (SPYOHK_03650) - 742495..743037 (+) 543 WP_002989140.1 hypothetical protein -
  SPYOHK_RS05430 (SPYOHK_03655) - 743161..743940 (+) 780 WP_002989141.1 formate/nitrite transporter family protein -
  SPYOHK_RS10260 - 744499..744681 (+) 183 WP_011527680.1 penicillin-binding protein -
  SPYOHK_RS05425 (SPYOHK_03660) recR 744728..745324 (+) 597 WP_002989144.1 recombination mediator RecR Machinery gene
  SPYOHK_RS05420 (SPYOHK_03665) - 745425..746471 (+) 1047 WP_002989146.1 D-alanine--D-alanine ligase -
  SPYOHK_RS05415 (SPYOHK_03670) - 746670..748061 (+) 1392 WP_002989148.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SPYOHK_RS05410 (SPYOHK_03675) - 748142..748837 (+) 696 WP_002989150.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21662.82 Da        Isoelectric Point: 4.8853

>NTDB_id=53953 SPYOHK_RS05425 WP_002989144.1 744728..745324(+) (recR) [Streptococcus pyogenes HKU QMH11M0907901]
MLYPTPIAKLMDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=53953 SPYOHK_RS05425 WP_002989144.1 744728..745324(+) (recR) [Streptococcus pyogenes HKU QMH11M0907901]
GTGCTTTATCCAACACCCATTGCAAAGTTAATGGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTTTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495

Multiple sequence alignment