Detailed information NTG0539406

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LK431_RS02740
• Genome accession: NZ_CP085951
• Coordinates: 539763..540767 (-)
• Length: 334 a.a.
• NCBI ID: WP_050837864.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain FDAARGOS_1561
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 534763..545767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK431_RS02715 (LK431_02715)	tehA	535745..536689 (+)	945	WP_172453969.1	dicarboxylate transporter/tellurite-resistance protein TehA	-
LK431_RS02720 (LK431_02720)	tsaA	536738..537457 (-)	720	WP_111695283.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
LK431_RS02725 (LK431_02725)	menA	537519..538430 (+)	912	WP_111695282.1	1,4-dihydroxy-2-naphthoate octaprenyltransferase	-
LK431_RS02730 (LK431_02730)	rraA	538482..538970 (+)	489	WP_111695281.1	ribonuclease E activity regulator RraA	-
LK431_RS02735 (LK431_02735)	-	539102..539653 (-)	552	WP_050837863.1	TIGR00645 family protein	-
LK431_RS02740 (LK431_02740)	cytR	539763..540767 (-)	1005	WP_050837864.1	substrate-binding domain-containing protein	Regulator
LK431_RS02745 (LK431_02745)	rbsK	540795..541715 (-)	921	WP_111695280.1	ribokinase	-
LK431_RS02750 (LK431_02750)	rbsB	541813..542691 (-)	879	WP_050837866.1	ribose ABC transporter substrate-binding protein RbsB	-
LK431_RS02755 (LK431_02755)	rbsC	542711..543679 (-)	969	WP_050837867.1	ribose ABC transporter permease	-
LK431_RS02760 (LK431_02760)	rbsA	543695..545176 (-)	1482	WP_111695279.1	ribose ABC transporter ATP-binding protein RbsA	-
LK431_RS02765 (LK431_02765)	rbsD	545190..545609 (-)	420	WP_005639835.1	D-ribose pyranase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36700.35 Da
• Isoelectric Point: 7.6607

>NTDB_id=539406 LK431_RS02740 WP_050837864.1 539763..540767(-) (cytR) [Haemophilus influenzae strain FDAARGOS_1561]
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQQHQYNLIIAATGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGALGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVEALLQRIKNPNENYRTLVLEP
TCILRGSISTPSNI

Nucleotide

• Length: 1005 bp

>NTDB_id=539406 LK431_RS02740 WP_050837864.1 539763..540767(-) (cytR) [Haemophilus influenzae strain FDAARGOS_1561]
ATGGCGACAATGAAAGATATTGCACGACTGGCGCAAGTTTCGACTTCTACAGTTTCACATGTCATTAATGGATCGCGTTT
TGTTAGCGATGAAATTCGTGAGAAAGTGATGCGTATTGTCGCTGAACTGAATTACACCCCCTCAGCTGTTGCACGAAGTC
TTAAGGTGCGCGAAACCAAAACTATCGGGCTACTTGTCACCGCAACAAATAATCCATTCTTTGCAGAAGTGATGGCTGGC
GTGGAGCAATATTGTCAGCAGCATCAATATAATCTTATTATTGCTGCCACTGGTGGCGATGCCAAACGCCTACAACAAAA
TCTGCAAACTCTAATGCACAAACAAGTGGATGGTTTGCTTTTGATGTGTGGTGATAGCCGCTTTCAGGCTGATATAGAGT
TAGCCATTTCGCTGCCACTCGTTGTGATGGACTGGTGGTTTACTGAGTTAAATGCAGATAAAATACTCGAAAATTCAGCA
CTTGGTGGCTATTTGGCGACAAAAGCATTAATCGATGCAGGACATCGTAAAATTGGCATTATTACGGGAAATCTCAAAAA
ATCTGTCGCACAAAATCGTTTGCAAGGTTATAAAAATGCGCTGTCGGAAGCAAAAATTGCGTTAAATCCTCATTGGATTG
TCGAAAGTCATTTTGACTTTGAAGGCGGTGCCCTTGGTATACAATCTTTACTTACTCAATCTTCACGTCCAACAGCAGTT
TTTTGTTGTAGTGATACTATTGCTGTTGGTGCATACCAAGCTATTCAGCAACAAGGCTTACGTATTCCGCAAGATCTTTC
AATTATGGGCTATGATGACATTGAATTGGCTCGTTATCTCTCACCTCCCCTTTCCACCATTTGCCAACCGAAAGCTGAAC
TTGGCAAACTTGCTGTAGAAGCACTATTGCAACGAATTAAAAATCCTAATGAAAATTACCGCACTTTAGTGTTAGAGCCG
ACCTGTATTTTGAGAGGATCAATTTCTACCCCTTCAAACATATAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.349	99.401	0.371
cytR	Vibrio cholerae C6706	36.527	100	0.365