Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JVX94_RS06660 Genome accession   NZ_CP070345
Coordinates   1276471..1277373 (-) Length   300 a.a.
NCBI ID   WP_205185017.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1271471..1282373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS06645 (JVX94_06645) xerC 1271848..1272765 (-) 918 WP_205185012.1 tyrosine recombinase XerC -
  JVX94_RS06650 (JVX94_06650) trmFO 1272828..1274132 (-) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JVX94_RS06655 (JVX94_06655) topA 1274203..1276278 (-) 2076 WP_205185015.1 type I DNA topoisomerase -
  JVX94_RS06660 (JVX94_06660) dprA 1276471..1277373 (-) 903 WP_205185017.1 DNA-processing protein DprA Machinery gene
  JVX94_RS06665 (JVX94_06665) sucD 1277437..1278339 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  JVX94_RS06670 (JVX94_06670) sucC 1278362..1279522 (-) 1161 WP_205185020.1 ADP-forming succinate--CoA ligase subunit beta -
  JVX94_RS06675 (JVX94_06675) - 1279699..1279974 (-) 276 WP_047202155.1 FlhB-like flagellar biosynthesis protein -
  JVX94_RS06680 (JVX94_06680) - 1279971..1281710 (-) 1740 WP_144485181.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34069.49 Da        Isoelectric Point: 9.1119

>NTDB_id=539282 JVX94_RS06660 WP_205185017.1 1276471..1277373(-) (dprA) [Bacillus sp. PDNC022]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
LPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSAYGEACVKKIVGELVKEDWMVVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=539282 JVX94_RS06660 WP_205185017.1 1276471..1277373(-) (dprA) [Bacillus sp. PDNC022]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
CTTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAGTTCCGTCAGCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGGTTGTCAGTGGTTTAGCGAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATATCCAAAAGAGCATGC
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTTAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACGATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCAGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

37.847

96

0.363