Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JVX94_RS02970 Genome accession   NZ_CP070345
Coordinates   556058..556861 (+) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus sp. PDNC022     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 551058..561861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS02950 (JVX94_02950) - 551059..551913 (+) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  JVX94_RS02955 (JVX94_02955) argR 552079..552528 (+) 450 WP_024422938.1 transcriptional regulator ArgR -
  JVX94_RS02960 (JVX94_02960) recN 552562..554295 (+) 1734 WP_197198246.1 DNA repair protein RecN Machinery gene
  JVX94_RS02965 (JVX94_02965) spoIVB 554495..555772 (+) 1278 WP_048239243.1 SpoIVB peptidase -
  JVX94_RS02970 (JVX94_02970) spo0A 556058..556861 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  JVX94_RS02975 (JVX94_02975) - 557318..558418 (+) 1101 WP_095408972.1 Rap family tetratricopeptide repeat protein -
  JVX94_RS02980 (JVX94_02980) - 558645..559382 (+) 738 WP_205184508.1 glycerophosphodiester phosphodiesterase -
  JVX94_RS02985 (JVX94_02985) - 559419..559655 (-) 237 WP_111292269.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=539276 JVX94_RS02970 WP_024422935.1 556058..556861(+) (spo0A) [Bacillus sp. PDNC022]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=539276 JVX94_RS02970 WP_024422935.1 556058..556861(+) (spo0A) [Bacillus sp. PDNC022]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTGTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACGAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCTATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCCGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884