Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JVX94_RS02960 Genome accession   NZ_CP070345
Coordinates   552562..554295 (+) Length   577 a.a.
NCBI ID   WP_197198246.1    Uniprot ID   -
Organism   Bacillus sp. PDNC022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547562..559295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX94_RS02935 (JVX94_02935) - 547870..548130 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  JVX94_RS02940 (JVX94_02940) - 548120..549010 (+) 891 WP_203128606.1 polyprenyl synthetase family protein -
  JVX94_RS02945 (JVX94_02945) dxs 549161..551062 (+) 1902 WP_111292271.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JVX94_RS02950 (JVX94_02950) - 551059..551913 (+) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  JVX94_RS02955 (JVX94_02955) argR 552079..552528 (+) 450 WP_024422938.1 transcriptional regulator ArgR -
  JVX94_RS02960 (JVX94_02960) recN 552562..554295 (+) 1734 WP_197198246.1 DNA repair protein RecN Machinery gene
  JVX94_RS02965 (JVX94_02965) spoIVB 554495..555772 (+) 1278 WP_048239243.1 SpoIVB peptidase -
  JVX94_RS02970 (JVX94_02970) spo0A 556058..556861 (+) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  JVX94_RS02975 (JVX94_02975) - 557318..558418 (+) 1101 WP_095408972.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64683.51 Da        Isoelectric Point: 4.8106

>NTDB_id=539275 JVX94_RS02960 WP_197198246.1 552562..554295(+) (recN) [Bacillus sp. PDNC022]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=539275 JVX94_RS02960 WP_197198246.1 552562..554295(+) (recN) [Bacillus sp. PDNC022]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
TATTAATGGAAAGCTTGTCACCATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTTGATCAATTTGGGGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGATGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAGAAGCT
ATCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTCCAGACGCT
CAAAAATAAACTGGATGCGATGAGTCGTGATGCTCTGCTTGAAGCACTTAATGTTTCGGAGCTGCGAAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCAGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACAGATTGTCCGCTTTTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCCGGAGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCCATTGCCGAAAAAATTCACAAAGTAGCGTCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCCGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761