Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JVX96_RS08555 Genome accession   NZ_CP070343
Coordinates   1790345..1791952 (+) Length   535 a.a.
NCBI ID   WP_106935947.1    Uniprot ID   -
Organism   Variovorax sp. PDNC026     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785345..1796952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX96_RS08530 (JVX96_08530) argS 1785438..1787123 (+) 1686 WP_106935951.1 arginine--tRNA ligase -
  JVX96_RS08535 (JVX96_08535) - 1787135..1787900 (+) 766 Protein_1697 SPOR domain-containing protein -
  JVX96_RS08540 (JVX96_08540) - 1788051..1788698 (+) 648 WP_106935950.1 thiol:disulfide interchange protein DsbA/DsbL -
  JVX96_RS08545 (JVX96_08545) lptA 1788823..1789533 (+) 711 WP_106935949.1 lipopolysaccharide transport periplasmic protein LptA -
  JVX96_RS08550 (JVX96_08550) lptB 1789530..1790324 (+) 795 WP_106935948.1 LPS export ABC transporter ATP-binding protein -
  JVX96_RS08555 (JVX96_08555) rpoN/rpoN1 1790345..1791952 (+) 1608 WP_106935947.1 RNA polymerase factor sigma-54 Machinery gene
  JVX96_RS08560 (JVX96_08560) - 1791963..1793564 (+) 1602 WP_106935946.1 phospholipase D family protein -
  JVX96_RS08565 (JVX96_08565) - 1793593..1794237 (-) 645 WP_106935945.1 LysE family translocator -
  JVX96_RS08570 (JVX96_08570) - 1794383..1794640 (+) 258 WP_081267820.1 hypothetical protein -
  JVX96_RS08575 (JVX96_08575) - 1794680..1795336 (-) 657 WP_199851862.1 YceI family protein -
  JVX96_RS08580 (JVX96_08580) - 1795380..1795961 (-) 582 WP_081267822.1 YceI family protein -
  JVX96_RS08585 (JVX96_08585) - 1795958..1796551 (-) 594 WP_106935943.1 cytochrome b -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 58891.91 Da        Isoelectric Point: 4.5471

>NTDB_id=539256 JVX96_RS08555 WP_106935947.1 1790345..1791952(+) (rpoN/rpoN1) [Variovorax sp. PDNC026]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLDTADAPAARDDGSDGGDGE
SDFTPPPASTSTASTETATTTTADSDGPAAEIAEREPDWEGDGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQ
ESLQSFLHRQALSLRLSENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGA
RDLGECLSIQLRALAAEDDDEDEEQAQVYKTAIAICKQPMELLARRDFKRLATLTRSSEELVRSALQVIARLEPKPGRRF
VDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTIL
RVSNAIVERQKSYFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAVR
ALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=539256 JVX96_RS08555 WP_106935947.1 1790345..1791952(+) (rpoN/rpoN1) [Variovorax sp. PDNC026]
ATGAAGCAAGGGCTGTCCCTTCGCGTCTCGCAGCACTTGGCGTTGACGCCCCAGCTGCAGCAGTCGATCAGGCTGCTCCA
ACTCTCCACGCTCGAACTGAGCCAGGAAGTGGAGCAGATGCTCGACGAGAACCCCTTCCTCGAGCGCACCGCGGAAGAAG
CGGCGCGCGAGGAGTTCGGGCTCGACACCGCCGACGCCCCCGCTGCGCGCGATGACGGCAGTGACGGCGGCGACGGCGAG
AGCGACTTCACCCCGCCGCCCGCCAGCACCTCCACCGCCTCGACCGAGACCGCCACCACCACCACGGCCGACTCCGACGG
CCCCGCCGCCGAGATCGCCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCGCCCGACGACAGCGAGT
GGGGCAGCGACGCTCCCGCGCGCCAGAACAACCTGGGCGACGACGAACGCGCCGACGCCACCGAACTCGCGCGCAGCCAG
GAATCGCTGCAGTCGTTCCTGCACCGCCAGGCGCTGAGCCTGCGCCTGAGCGAGAACGACAGCGCCGCGCTGCGCTTCCT
GATCGAGTCGCTCAACGACGACGGCTACCTCGAAGACTCCCTGCCTGCGCTGGCCTCGGGCCTGGCCGGCGACGACAACG
ACCAGTTCGACGACCTGGTGCACCACTTCCAGGTGGCGCTCGGCCTGCTGCAGAGCCTGGAGCCGGTGGGCGTGGGGGCG
CGCGACCTCGGCGAATGCCTGAGCATCCAGCTGCGCGCGCTGGCCGCCGAGGACGACGACGAAGACGAAGAGCAGGCACA
GGTCTACAAGACCGCGATCGCCATCTGCAAGCAGCCGATGGAACTGCTCGCGCGGCGCGACTTCAAGCGCCTGGCCACGC
TCACCCGCAGCAGCGAAGAGCTGGTGCGCTCGGCGCTGCAGGTCATTGCGCGGCTGGAGCCCAAGCCGGGGCGCCGTTTC
GTCGACGTCGAGCGCAACATCGTCATTCCCGACGTGATCGTCACCAAGACCGGACGCGGCACCAACGTCAAGTTCCGCGT
CATGCTGAATCCCGAGGTCATGCCGCGCCTGCGCGTGCACGACATCTATGCCGGCGCGCTCAAGTCGCACAAGGGCGAGG
GCAGCCAGGCGCTGTCGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTG
CGCGTGAGCAACGCCATCGTCGAGCGCCAGAAGAGCTACTTCGTGCACGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCG
CGAAATTGCGGACGAACTGGGCCTGCACGAATCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCGTTCG
GCACGGTCGAGCTGAAGTATTTCTTCGGCTCGGCGCTGGGCACCGAGACCGGCGGCAATGCGTCGAGCACGGCGGTGCGC
GCGCTGATCAAGCAGTTCGTGAGCTCCGAGAGCATCAAGAAGCCGCTGTCGGACAGCCAGATCTCCGAGATGCTGAAGGA
GCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAAGCCTTGCGCATTGCGCCCGCCAACCTGCGCAAGG
CCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(377-533)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(154-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.493

100

0.516