Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   LK450_RS06615 Genome accession   NZ_CP085939
Coordinates   1359480..1361414 (+) Length   644 a.a.
NCBI ID   WP_003032068.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 1354480..1366414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS06585 (LK450_06585) - 1354602..1354829 (-) 228 WP_003032061.1 hypothetical protein -
  LK450_RS06590 (LK450_06590) - 1354839..1355789 (-) 951 WP_003032049.1 ketopantoate reductase family protein -
  LK450_RS06595 (LK450_06595) purK 1355790..1356881 (-) 1092 WP_003032036.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LK450_RS06600 (LK450_06600) purE 1356868..1357356 (-) 489 WP_003032076.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LK450_RS06605 (LK450_06605) - 1357594..1358028 (-) 435 WP_003032062.1 DUF523 domain-containing protein -
  LK450_RS06610 (LK450_06610) purD 1358018..1359283 (-) 1266 WP_003032080.1 phosphoribosylamine--glycine ligase -
  LK450_RS06615 (LK450_06615) lytF 1359480..1361414 (+) 1935 WP_003032068.1 GBS Bsp-like repeat-containing protein Regulator
  LK450_RS06620 (LK450_06620) purH 1361473..1363020 (-) 1548 WP_003032070.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  LK450_RS06625 (LK450_06625) - 1363035..1363205 (-) 171 WP_223349579.1 phosphoribosylaminoimidazolecarboxamide formyltransferase -
  LK450_RS06630 (LK450_06630) purN 1363260..1363814 (-) 555 WP_003032059.1 phosphoribosylglycinamide formyltransferase -
  LK450_RS06635 (LK450_06635) purM 1363814..1364833 (-) 1020 WP_003032034.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 644 a.a.        Molecular weight: 71147.85 Da        Isoelectric Point: 7.7438

>NTDB_id=539227 LK450_RS06615 WP_003032068.1 1359480..1361414(+) (lytF) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MKKYNQLFLLSSAMLSVFSAQLTAQAAETNNTQKSSNPATLASDITVNVSGNTASINYTRLQTQVPYTIYHAVWSDENGQ
DDIKWYSAPQTPTTAVDLRQHTGYGTFHVHTYININGKMVGLNGTTFKVEKPASGTVSTTVLGKTAQISFTRNKDQTNAN
ILHAVWSDEKGQDDIKWYTAGQDTTEIDLSNHKGYGVYHVHTYESKNGKMIGLNGTTFNLEKPNPTIQTSFPEPGIMDIQ
IKNVPETIYKLTVPAWSDRNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGITAQVDA
DKLPSEEEQKPFFSVENINQEQGTYTVKVSETSESKPIQSVRVPIWSTSNQSNIKWYAATNHGDGTFTAAFDIRNHQVLS
GTYTNHIYVKYKDGSEHSYVTDSVAMSAEKIKTKVSVAKRSTYLYEVTVTDAYGDGKISLPTWSEVNGQDDIQWYTATKA
GNGIYKFTVDTQKHTGSGLFHTHVYRNLNGQIIGLTGTSYQVEKPAVSFQPNYAAATTYPKGQCTWGAKALAPWAGNYWG
NGGDWTASARRAGFKTGTTPQVGAIICWTDGGYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGAVSY
IYPK

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=539227 LK450_RS06615 WP_003032068.1 1359480..1361414(+) (lytF) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGAAAAAATACAATCAATTATTTTTACTATCCAGCGCTATGTTGAGCGTTTTTTCAGCTCAACTAACAGCTCAAGCCGC
GGAAACAAATAATACTCAAAAAAGCTCAAATCCAGCAACTCTCGCTAGCGATATTACTGTCAATGTTTCAGGAAACACTG
CTTCTATTAACTATACACGTTTGCAAACGCAAGTTCCTTACACCATTTACCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACATTAAGTGGTATTCCGCGCCCCAAACACCAACTACAGCTGTTGATTTGCGTCAGCACACTGGTTATGGAACCTT
TCACGTCCACACCTATATCAATATCAATGGGAAAATGGTTGGTTTAAACGGAACGACTTTCAAAGTAGAAAAACCAGCTA
GCGGCACGGTTTCTACAACCGTTTTAGGAAAGACTGCTCAAATATCCTTTACTCGAAACAAAGATCAAACAAATGCCAAT
ATTTTACACGCTGTTTGGTCTGACGAAAAAGGACAAGATGATATCAAGTGGTATACAGCAGGGCAAGACACAACAGAAAT
TGACTTATCCAATCATAAAGGATACGGTGTTTACCATGTTCATACTTATGAAAGTAAAAACGGAAAGATGATTGGATTAA
ATGGCACCACTTTTAACCTTGAAAAACCAAATCCTACTATTCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAG
ATCAAAAATGTTCCTGAAACAATCTACAAACTAACTGTTCCGGCTTGGTCTGACCGCAACGGACAGGATGATCTTCAATG
GTATGCAGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTT
ATCACATTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATCACTGCCCAAGTTGATGCT
GATAAATTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATCAAGAACAAGGGACTTATACCGT
CAAAGTTAGTGAAACTTCAGAGTCCAAGCCGATTCAATCCGTCCGAGTACCTATTTGGAGCACGAGCAATCAAAGCAATA
TTAAGTGGTATGCAGCCACTAATCACGGTGACGGAACATTTACGGCAGCATTTGATATTCGCAATCATCAAGTTTTGTCT
GGAACATACACCAATCATATTTATGTGAAATATAAAGACGGTAGCGAGCATAGTTACGTAACGGATTCGGTTGCTATGTC
CGCAGAAAAAATTAAAACCAAAGTATCTGTCGCTAAACGCTCAACTTATCTTTATGAGGTGACGGTGACAGATGCTTACG
GCGATGGCAAGATTAGCCTACCGACTTGGTCTGAAGTCAACGGCCAAGATGATATTCAGTGGTACACCGCTACTAAAGCT
GGAAATGGAATTTACAAATTCACAGTTGATACGCAAAAACACACTGGCAGTGGCCTTTTCCATACACATGTTTACCGCAA
TCTCAACGGTCAAATAATTGGACTAACAGGTACAAGCTATCAGGTAGAGAAGCCTGCTGTCTCTTTCCAACCAAATTATG
CCGCAGCAACGACTTATCCAAAAGGTCAATGCACTTGGGGCGCCAAAGCTCTTGCGCCTTGGGCTGGCAATTATTGGGGC
AACGGTGGTGACTGGACTGCTAGTGCCAGACGAGCTGGTTTTAAAACCGGTACAACTCCACAAGTAGGGGCTATTATTTG
TTGGACAGACGGTGGTTACGGTCACGTTGGAGTTGTTACTCACGTTGCCTCAAACACACGCATTCAGATTCAAGAGGCCA
ACTACGCTGGAAAACAGTATATTGGCAACTTCCGCGGCTGGTTCAATCCTCATGCAGCTGGACAAGGAGCAGTTAGTTAC
ATTTATCCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.977

81.056

0.373

  lytF Streptococcus gordonii str. Challis substr. CH1

44.961

80.124

0.36