Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   LK450_RS05400 Genome accession   NZ_CP085939
Coordinates   1112304..1113350 (-) Length   348 a.a.
NCBI ID   WP_004225005.1    Uniprot ID   -
Organism   Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107304..1118350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK450_RS05375 (LK450_05375) nusA 1107535..1108728 (-) 1194 WP_004344529.1 transcription termination factor NusA -
  LK450_RS05380 (LK450_05380) rimP 1108779..1109267 (-) 489 WP_004224979.1 ribosome maturation factor RimP -
  LK450_RS05385 (LK450_05385) - 1109518..1110207 (-) 690 WP_026248194.1 VIT family protein -
  LK450_RS05390 (LK450_05390) trmB 1110824..1111459 (-) 636 WP_003033795.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LK450_RS05395 (LK450_05395) ccrZ 1111456..1112253 (-) 798 WP_003043230.1 cell cycle regulator CcrZ -
  LK450_RS05400 (LK450_05400) pptB 1112304..1113350 (-) 1047 WP_004225005.1 ABC transporter permease Regulator
  LK450_RS05405 (LK450_05405) pptA 1113347..1114078 (-) 732 WP_004344524.1 ABC transporter ATP-binding protein Regulator
  LK450_RS05410 (LK450_05410) - 1114147..1114557 (+) 411 WP_004344535.1 HIT family protein -
  LK450_RS05415 (LK450_05415) - 1114567..1114854 (+) 288 WP_004224964.1 hypothetical protein -
  LK450_RS05420 (LK450_05420) brpA 1114901..1116016 (-) 1116 WP_004224985.1 biofilm formation/cell division transcriptional regulator BrpA -
  LK450_RS05425 (LK450_05425) - 1116023..1116544 (-) 522 WP_003033089.1 GNAT family N-acetyltransferase -
  LK450_RS05430 (LK450_05430) tsaE 1116537..1116977 (-) 441 WP_004344533.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 40764.97 Da        Isoelectric Point: 10.3231

>NTDB_id=539216 LK450_RS05400 WP_004225005.1 1112304..1113350(-) (pptB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
MRDLFQKRKQVFRNQCLKYSRYVFNDHFVLFLLVFTGFLAVQYSQLLRNLPSNHLPIILALAVLLILLLPLGRIATYMEK
PDSLFLLVKEEELNSYLQEQMRSSYRLWALLQTVALLLLAPLLLALGMPLWGWFILVFLMLLAKWFIFLQKSQKFYQGAG
VNWGYLIAYEERRKQTILRFFALFTNVKGISNSVKRRAYLDGLTNILPKRQSTTWQNMYLRSYLRNGDFLALTIRLLFLS
LLGIGFISQSWIAAIFVALLNYLLLFQLTALYHAFDYQYLTFLFPLEINSKLKGVKQVIALIGYSVLFVETMMALLFFQD
RVALLFMIGITLLLYVIYLPFKLRSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=539216 LK450_RS05400 WP_004225005.1 1112304..1113350(-) (pptB) [Streptococcus anginosus subsp. anginosus strain FDAARGOS_1569]
ATGAGAGATCTGTTTCAAAAGCGCAAACAAGTATTTCGCAATCAATGTTTGAAGTATTCGCGCTATGTTTTTAACGACCA
TTTTGTCCTCTTTTTATTAGTTTTTACTGGCTTTTTAGCTGTTCAATACAGTCAGTTGTTGCGAAATTTACCTTCAAATC
ACCTGCCAATCATTCTTGCTTTAGCAGTTCTTTTGATTTTATTGTTGCCTCTGGGACGAATCGCAACATATATGGAAAAA
CCAGATAGTCTATTTTTATTGGTCAAAGAAGAGGAACTAAACAGCTACTTACAAGAACAAATGCGTTCATCTTATCGATT
ATGGGCCTTGCTTCAAACCGTTGCGTTGTTACTATTAGCACCGCTTCTTCTTGCTTTAGGCATGCCGCTTTGGGGCTGGT
TTATTCTTGTTTTTCTTATGTTGCTAGCAAAATGGTTTATCTTTTTGCAAAAAAGCCAGAAATTTTACCAAGGTGCAGGG
GTGAATTGGGGCTATCTCATTGCTTACGAAGAAAGACGAAAACAGACGATTCTGCGTTTCTTTGCTCTCTTTACCAATGT
TAAGGGAATTTCCAATAGCGTAAAACGCCGAGCATATCTTGATGGTTTGACGAATATTCTACCAAAAAGACAGTCAACTA
CTTGGCAAAATATGTATTTGCGTTCTTATTTGCGCAATGGTGATTTTCTTGCCTTGACTATACGGTTGCTGTTTCTGTCT
CTTTTGGGAATTGGTTTTATCAGTCAATCGTGGATTGCTGCCATATTTGTGGCATTGTTAAATTATCTCCTGCTATTTCA
GTTGACAGCCTTGTACCATGCCTTTGATTACCAATATTTGACGTTCTTATTCCCTTTAGAAATCAACTCAAAGTTAAAAG
GAGTGAAACAAGTGATTGCTCTTATTGGCTACAGCGTGCTTTTTGTGGAAACAATGATGGCTTTGCTGTTTTTCCAAGAT
AGAGTAGCTTTGCTTTTTATGATAGGAATCACATTGCTACTCTATGTCATTTATTTACCATTCAAATTAAGAAGTTTGGT
TGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(160-330)

Bacterial ABC transporter protein EcsB (EcsB)

(3-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.839

100

0.468
  pptB Streptococcus salivarius strain HSISS4

46.264

100

0.463