Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A911_RS03155 Genome accession   NC_018709
Coordinates   596436..597209 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni PT14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 591436..602209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A911_RS03140 (A911_03080) - 592285..594219 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  A911_RS03145 (A911_03085) ilvC 594338..595360 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  A911_RS03150 (A911_03090) - 595364..596446 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  A911_RS03155 (A911_03095) dprA 596436..597209 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  A911_RS03160 (A911_03100) ruvX 597206..597589 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  A911_RS03165 (A911_03105) - 597618..598457 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A911_RS03170 (A911_03110) msrA 598633..599130 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A911_RS03175 (A911_03115) ppa 599171..599689 (-) 519 WP_002867724.1 inorganic diphosphatase -
  A911_RS03180 (A911_03120) adk 599699..600277 (-) 579 WP_002859580.1 adenylate kinase -
  A911_RS03185 (A911_03125) aspS 600274..602025 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=53912 A911_RS03155 WP_002858613.1 596436..597209(+) (dprA) [Campylobacter jejuni subsp. jejuni PT14]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=53912 A911_RS03155 WP_002858613.1 596436..597209(+) (dprA) [Campylobacter jejuni subsp. jejuni PT14]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment