Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JQN76_RS11495 Genome accession   NZ_CP070305
Coordinates   2361412..2362482 (-) Length   356 a.a.
NCBI ID   WP_000776421.1    Uniprot ID   -
Organism   Staphylococcus sp. SM3655     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2356412..2367482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN76_RS11455 (JQN76_11455) gcvPA 2356589..2357935 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JQN76_RS11460 (JQN76_11460) gcvT 2357955..2359046 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JQN76_RS11465 (JQN76_11465) - 2359205..2359729 (-) 525 WP_001015121.1 shikimate kinase -
  JQN76_RS11470 (JQN76_11470) - 2359719..2359865 (-) 147 WP_001789879.1 hypothetical protein -
  JQN76_RS11475 (JQN76_11475) comGF 2359962..2360459 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQN76_RS11480 (JQN76_11480) comGE 2360377..2360676 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JQN76_RS11485 (JQN76_11485) comGD 2360663..2361109 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQN76_RS11490 (JQN76_11490) comGC 2361087..2361398 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JQN76_RS11495 (JQN76_11495) comGB 2361412..2362482 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQN76_RS11500 (JQN76_11500) comGA 2362454..2363428 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JQN76_RS11505 (JQN76_11505) - 2363480..2364103 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JQN76_RS11510 (JQN76_11510) - 2364100..2364429 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JQN76_RS11515 (JQN76_11515) - 2364429..2365415 (-) 987 WP_000161314.1 ROK family glucokinase -
  JQN76_RS11520 (JQN76_11520) - 2365412..2365615 (-) 204 WP_000087561.1 YqgQ family protein -
  JQN76_RS11525 (JQN76_11525) - 2365596..2367059 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.81 Da        Isoelectric Point: 10.0606

>NTDB_id=539111 JQN76_RS11495 WP_000776421.1 2361412..2362482(-) (comGB) [Staphylococcus sp. SM3655]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=539111 JQN76_RS11495 WP_000776421.1 2361412..2362482(-) (comGB) [Staphylococcus sp. SM3655]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997