Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JQN76_RS11485 Genome accession   NZ_CP070305
Coordinates   2360663..2361109 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus sp. SM3655     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2355663..2366109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN76_RS11455 (JQN76_11455) gcvPA 2356589..2357935 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JQN76_RS11460 (JQN76_11460) gcvT 2357955..2359046 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JQN76_RS11465 (JQN76_11465) - 2359205..2359729 (-) 525 WP_001015121.1 shikimate kinase -
  JQN76_RS11470 (JQN76_11470) - 2359719..2359865 (-) 147 WP_001789879.1 hypothetical protein -
  JQN76_RS11475 (JQN76_11475) comGF 2359962..2360459 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQN76_RS11480 (JQN76_11480) comGE 2360377..2360676 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  JQN76_RS11485 (JQN76_11485) comGD 2360663..2361109 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQN76_RS11490 (JQN76_11490) comGC 2361087..2361398 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JQN76_RS11495 (JQN76_11495) comGB 2361412..2362482 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQN76_RS11500 (JQN76_11500) comGA 2362454..2363428 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JQN76_RS11505 (JQN76_11505) - 2363480..2364103 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JQN76_RS11510 (JQN76_11510) - 2364100..2364429 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JQN76_RS11515 (JQN76_11515) - 2364429..2365415 (-) 987 WP_000161314.1 ROK family glucokinase -
  JQN76_RS11520 (JQN76_11520) - 2365412..2365615 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=539109 JQN76_RS11485 WP_072433556.1 2360663..2361109(-) (comGD) [Staphylococcus sp. SM3655]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=539109 JQN76_RS11485 WP_072433556.1 2360663..2361109(-) (comGD) [Staphylococcus sp. SM3655]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGCAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993