Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JQN76_RS08560 Genome accession   NZ_CP070305
Coordinates   1742297..1743283 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus sp. SM3655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737297..1748283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN76_RS08535 (JQN76_08535) opp4B 1737510..1738472 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  JQN76_RS08540 (JQN76_08540) opp4C 1738484..1739365 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  JQN76_RS08545 (JQN76_08545) trpS 1739407..1740396 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  JQN76_RS08550 (JQN76_08550) spxA 1740691..1741086 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JQN76_RS08555 (JQN76_08555) mecA 1741457..1742176 (+) 720 WP_001217728.1 adaptor protein MecA -
  JQN76_RS08560 (JQN76_08560) coiA 1742297..1743283 (+) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  JQN76_RS08565 (JQN76_08565) pepF 1743331..1745139 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  JQN76_RS08570 (JQN76_08570) yjbH 1745599..1746405 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  JQN76_RS08575 (JQN76_08575) - 1746428..1746793 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JQN76_RS08580 (JQN76_08580) - 1746897..1747490 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  JQN76_RS08585 (JQN76_08585) - 1747676..1748023 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=539100 JQN76_RS08560 WP_000959292.1 1742297..1743283(+) (coiA) [Staphylococcus sp. SM3655]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=539100 JQN76_RS08560 WP_000959292.1 1742297..1743283(+) (coiA) [Staphylococcus sp. SM3655]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976