Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   JQN76_RS06635 Genome accession   NZ_CP070305
Coordinates   1348214..1348783 (+) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus sp. SM3655     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343214..1353783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN76_RS06610 (JQN76_06610) cysE 1344427..1345074 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  JQN76_RS06615 (JQN76_06615) cysS 1345058..1346458 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  JQN76_RS06620 (JQN76_06620) - 1346451..1346855 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  JQN76_RS06625 (JQN76_06625) rlmB 1346863..1347609 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JQN76_RS06630 (JQN76_06630) - 1347609..1348133 (+) 525 WP_000664738.1 NYN domain-containing protein -
  JQN76_RS06635 (JQN76_06635) sigH 1348214..1348783 (+) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  JQN76_RS06640 (JQN76_06640) rpmG 1348898..1349041 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  JQN76_RS06645 (JQN76_06645) secE 1349097..1349279 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  JQN76_RS06650 (JQN76_06650) nusG 1349292..1349840 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  JQN76_RS06655 (JQN76_06655) rplK 1350021..1350443 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  JQN76_RS06660 (JQN76_06660) rplA 1350651..1351343 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  JQN76_RS06665 (JQN76_06665) rplJ 1351615..1352115 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  JQN76_RS06670 (JQN76_06670) rplL 1352158..1352526 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  JQN76_RS06675 (JQN76_06675) - 1352677..1353285 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=539095 JQN76_RS06635 WP_000872874.1 1348214..1348783(+) (sigH) [Staphylococcus sp. SM3655]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=539095 JQN76_RS06635 WP_000872874.1 1348214..1348783(+) (sigH) [Staphylococcus sp. SM3655]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984