Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   JQN73_RS22625 Genome accession   NZ_CP070304
Coordinates   1868684..1869124 (+) Length   146 a.a.
NCBI ID   WP_205322542.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863684..1874124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS07955 (JQN73_07955) - 1864452..1865027 (+) 576 WP_205322541.1 PilX N-terminal domain-containing pilus assembly protein -
  JQN73_RS07960 (JQN73_07960) - 1865166..1868672 (+) 3507 WP_240162474.1 pilus assembly protein -
  JQN73_RS22625 (JQN73_07965) pilE 1868684..1869124 (+) 441 WP_205322542.1 type IV pilin protein Machinery gene
  JQN73_RS07970 (JQN73_07970) - 1869206..1869493 (-) 288 WP_205322543.1 zf-TFIIB domain-containing protein -
  JQN73_RS07975 (JQN73_07975) - 1869620..1870246 (-) 627 WP_205323257.1 Bax inhibitor-1/YccA family protein -
  JQN73_RS07980 (JQN73_07980) - 1870347..1870757 (-) 411 WP_205322544.1 HPF/RaiA family ribosome-associated protein -
  JQN73_RS07985 (JQN73_07985) nhaR 1870852..1871772 (+) 921 WP_205322545.1 transcriptional activator NhaR -
  JQN73_RS07990 (JQN73_07990) - 1871820..1872632 (-) 813 WP_205322546.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  JQN73_RS07995 (JQN73_07995) - 1872629..1873510 (-) 882 WP_205322547.1 proline/glycine betaine ABC transporter permease -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15519.83 Da        Isoelectric Point: 7.7238

>NTDB_id=539081 JQN73_RS22625 WP_205322542.1 1868684..1869124(+) (pilE) [Glaciimonas sp. PAMC28666]
MHSTPIALRKHLQRAFTLVELMIVVGIVGILAAVAYPSYTTYVLKSHRADALTALAQTQVILERCFAQNFSYSQACASLP
AFPLASPQGYYTVTNPVLSATAFTLTATAIGTQALDTTCASLSVDQANQQTALNSAGVAQTVCWHP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=539081 JQN73_RS22625 WP_205322542.1 1868684..1869124(+) (pilE) [Glaciimonas sp. PAMC28666]
ATGCACTCAACTCCTATAGCTTTGCGCAAGCACCTGCAGCGCGCTTTCACGCTGGTCGAACTGATGATTGTGGTCGGGAT
AGTTGGCATCCTTGCGGCTGTTGCCTACCCGAGCTATACCACTTATGTACTTAAATCCCATCGCGCTGATGCGCTAACAG
CGCTCGCCCAAACCCAGGTAATACTGGAACGATGCTTTGCCCAAAATTTTTCTTACAGTCAGGCGTGTGCTTCGCTTCCA
GCCTTTCCGCTAGCCTCGCCTCAAGGCTATTACACCGTTACCAATCCGGTCCTCTCTGCAACGGCTTTCACGCTGACCGC
CACCGCCATTGGCACGCAAGCGCTCGATACGACGTGTGCCAGTTTATCCGTCGACCAGGCGAATCAGCAAACCGCATTAA
ACAGTGCTGGTGTCGCACAAACGGTCTGCTGGCATCCTTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-123)

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

58.209

91.781

0.534
  pilE Legionella pneumophila strain ERS1305867

58.209

91.781

0.534