Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JQN73_RS10665 Genome accession   NZ_CP070304
Coordinates   2509815..2511326 (+) Length   503 a.a.
NCBI ID   WP_205322990.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2504815..2516326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS10645 (JQN73_10645) - 2505796..2506572 (+) 777 Protein_2101 NYN domain-containing protein -
  JQN73_RS10650 (JQN73_10650) - 2506794..2507603 (+) 810 WP_205322988.1 inner membrane protein YpjD -
  JQN73_RS10655 (JQN73_10655) - 2507600..2507899 (+) 300 WP_205322989.1 PP0621 family protein -
  JQN73_RS10660 (JQN73_10660) - 2507984..2509783 (+) 1800 WP_240162505.1 PAS domain-containing sensor histidine kinase -
  JQN73_RS10665 (JQN73_10665) pilR 2509815..2511326 (+) 1512 WP_205322990.1 sigma-54 dependent transcriptional regulator Regulator
  JQN73_RS10670 (JQN73_10670) ampD 2511342..2512034 (+) 693 WP_205322991.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JQN73_RS10675 (JQN73_10675) - 2512507..2515440 (+) 2934 WP_205322992.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54588.79 Da        Isoelectric Point: 5.9984

>NTDB_id=539074 JQN73_RS10665 WP_205322990.1 2509815..2511326(+) (pilR) [Glaciimonas sp. PAMC28666]
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLTEARRLLLLRDYALVLTDMRLLDGLGIELVREVVASGKMTPVAV
ITAFGSADNAVMALKAGAFDYLSKPVALDQLRLMVQSALRVHAPERSGPPTAGGAGMSPRGDISHTKASAPPLRLIGVSA
AMQDLRTQIARLARSMAPIAISGESGSGKELAARDLHALSPRADKPFIAVNCGAIPENLMEAEFFGYRKGAFTGAADDRD
GFFQAANGGTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATTEEVVDVRLVSATHQNLAECVEKGKFRQDLYYRLNVIE
LHLPPLRERADDIGLLAEVILARLTFPDPHQAPVALSAAALQALHGYTFPGNVRELENILERALAFANDGVIEVSDLALK
TSGLRQREAASATESREPIGPEESAATVAAIIAMGQQFVIHPDDANVTLPPSLPMHLDDVERNIIRQALGRTQFNRTKAA
ELLGISFRQLRYRMQRLSIHEQE

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=539074 JQN73_RS10665 WP_205322990.1 2509815..2511326(+) (pilR) [Glaciimonas sp. PAMC28666]
ATGACTTCACCCCGTATTCTGGTAGTCGATGACGAAGCGCACCTACGCGAACTGTTGGAAATCGCGTTGGTTAAAATGGG
TCTGGACGTCGATAGTGCCGACTCGCTGACGGAGGCGCGACGCCTCCTTTTGCTGCGTGATTATGCTCTCGTGCTGACTG
ACATGCGGCTTCTTGACGGACTCGGCATTGAGCTGGTGCGCGAAGTTGTGGCCAGCGGCAAGATGACTCCGGTCGCTGTC
ATTACGGCATTCGGCAGTGCCGACAATGCCGTCATGGCGCTTAAGGCAGGCGCTTTTGATTATTTATCGAAGCCGGTCGC
ACTCGATCAGCTGCGTTTGATGGTGCAATCGGCGCTACGCGTACATGCGCCCGAGCGCAGCGGGCCGCCGACTGCCGGGG
GGGCTGGCATGTCGCCACGGGGCGATATCAGCCACACCAAAGCCAGCGCGCCTCCCTTACGTCTGATTGGGGTTTCAGCG
GCGATGCAGGATCTGCGGACCCAAATTGCGAGGCTGGCGCGGAGCATGGCACCCATTGCAATCAGCGGCGAATCCGGCAG
CGGGAAAGAATTGGCCGCACGCGATTTGCATGCGCTCAGTCCGCGAGCCGATAAACCTTTTATCGCGGTGAATTGCGGTG
CTATTCCCGAGAATTTGATGGAAGCCGAATTTTTTGGCTATCGTAAAGGTGCGTTTACTGGCGCAGCCGATGATCGTGAC
GGTTTTTTTCAGGCCGCAAATGGCGGTACCTTGTTACTCGACGAAGTGGCTGACCTGCCGTTGGCGATGCAGGTCAAATT
ATTGCGTGCGATTCAAGAGCGTCGGGTCCGCAAAGTCGGTGCCACCACGGAAGAGGTGGTAGATGTACGTCTGGTAAGCG
CCACTCACCAAAATTTGGCCGAGTGCGTCGAAAAAGGCAAGTTTCGTCAGGATTTGTATTACCGTTTGAATGTCATCGAG
CTTCATCTGCCGCCGTTGCGGGAGCGGGCCGACGATATTGGTCTTCTGGCTGAAGTCATTTTGGCGCGTCTGACCTTTCC
GGACCCACACCAGGCGCCGGTAGCGCTGAGTGCTGCCGCCTTGCAAGCACTACACGGATATACCTTTCCCGGAAATGTCC
GCGAATTAGAAAATATCCTTGAGCGGGCTCTGGCGTTTGCCAACGATGGCGTGATCGAAGTGTCTGATCTGGCATTAAAA
ACATCGGGACTTCGGCAAAGGGAAGCTGCCAGCGCCACCGAGTCGCGAGAACCAATTGGTCCGGAGGAATCGGCGGCGAC
CGTTGCTGCAATCATCGCAATGGGACAACAATTCGTGATTCATCCGGATGATGCCAACGTCACGTTGCCGCCATCACTGC
CGATGCATTTAGACGATGTGGAACGTAATATCATCCGGCAGGCGTTGGGGCGTACCCAATTTAACCGCACTAAAGCCGCC
GAGTTATTAGGGATCAGCTTTCGTCAATTGCGGTATCGGATGCAGCGGTTATCAATTCATGAGCAGGAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(457-497)

Sigma-54 interaction domain (Sigma54_activat)

(155-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.1

99.205

0.497
  pilR Acinetobacter baumannii strain A118

42.032

99.801

0.419