Detailed information NTG0053861

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SPB_RS10015
• Genome accession: NZ_AEUT02000001
• Coordinates: 1983357..1984451 (-)
• Length: 364 a.a.
• NCBI ID: WP_003105355.1
• Uniprot ID: A0ABN0INW8
• Organism: Streptococcus parauberis NCFD 2020
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1978357..1989451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPB_RS10000 (SPB_2063)	-	1979155..1980027 (-)	873	WP_003104058.1	YitT family protein	-
SPB_RS10005 (SPB_2064)	trpS	1980423..1981445 (+)	1023	WP_003103593.1	tryptophan--tRNA ligase	-
SPB_RS10010 (SPB_2065)	guaB	1981688..1983169 (+)	1482	WP_003104758.1	IMP dehydrogenase	-
SPB_RS10015 (SPB_2066)	recF	1983357..1984451 (-)	1095	WP_003105355.1	DNA replication/repair protein RecF	Machinery gene
SPB_RS10020 (SPB_2067)	yaaA	1984454..1984858 (-)	405	WP_003103342.1	S4 domain-containing protein YaaA	-
SPB_RS10025 (SPB_2068)	-	1985235..1986479 (+)	1245	WP_003105281.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SPB_RS10030 (SPB_2069)	-	1986479..1987759 (+)	1281	WP_003103837.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SPB_RS10035 (SPB_2070)	-	1987809..1988786 (+)	978	WP_003103025.1	RodZ family helix-turn-helix domain-containing protein	-
SPB_RS10040 (SPB_2071)	pgsA	1988799..1989341 (+)	543	WP_003105484.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41839.84 Da
• Isoelectric Point: 7.6337

>NTDB_id=53861 SPB_RS10015 WP_003105355.1 1983357..1984451(-) (recF) [Streptococcus parauberis NCFD 2020]
MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQFSTDRLSIEGKLNRLSGN
ISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQR
NAYLKAARTIDFDFLVVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQLIQEKFME
QLERNRQRDIFRKNTSIGPHRDDIEFYINNMNANFASQGQHRSLILSIKMAEVSLMKILTGDNPILLLDDVMSELDNTRQ
TKLIETVIQENVQTFITTTSLEHLSQLPKTLKTFHVTSGTIKAD

Nucleotide

• Length: 1095 bp

>NTDB_id=53861 SPB_RS10015 WP_003105355.1 1983357..1984451(-) (recF) [Streptococcus parauberis NCFD 2020]
ATGTGGTTAAAGGAATTAACACTAAATCACTTTAGAAATTATAATGACTTAAATATAAATTTTTCAGAGGGACTAAACAT
CTTTATAGGAAACAATGCCCAAGGAAAAACGAACATCTTAGAAGCTATCTATTTTATTGCCTTAACTAGAAGTCATCGCA
CAAGAAGTGATAAAGAATTAATCCAGTTTTCAACTGATCGTTTATCTATTGAAGGAAAATTAAATCGCCTCTCAGGTAAT
ATCAGTTTAGAAATTAATTTATCTGATAAAGGTCGAATAACAAAGATTAATTCATTAAAACAAGCAAAACTTTCTGAATA
TATAGGTACAATGATGGTAGTACTCTTTGCTCCTGAAGATTTACAATTAGTTAAAGGCGCTCCTAGTCTTCGAAGAAAGT
TTATTGATATTGATTTAGGTCAAATTAAACCTGTTTATCTATCTGACTTATCGAATTATAACCATATTTTAAAACAAAGA
AACGCATATTTAAAAGCTGCTAGAACAATTGATTTTGACTTTCTAGTAGTTTTGGATCAACAATTATCATATTATGGTAG
CCGTGTTATTCAGCAAAGAATTCAATTCATTGCTGATCTTGAAAAAGAAGCAGATGCTCATCATCAGGCAATATCAAATG
AACTAGAAAGTTTACAAATTAAATATATTTCTAGCATTGATACAAGTCAAAGTCAACTTATTCAAGAAAAATTCATGGAG
CAACTTGAAAGAAATCGTCAACGTGATATTTTTAGAAAGAATACGAGTATTGGCCCACATAGAGATGACATTGAATTTTA
TATAAATAATATGAATGCAAATTTTGCAAGCCAAGGTCAACATCGAAGCTTAATTTTATCCATAAAGATGGCTGAAGTGA
GTTTAATGAAAATCTTGACTGGAGATAATCCAATACTACTGTTAGATGATGTTATGAGTGAATTAGACAATACAAGACAA
ACAAAATTAATTGAGACTGTCATTCAAGAAAATGTTCAAACTTTTATTACTACTACTAGTTTGGAACACCTCTCGCAACT
TCCAAAAACTTTAAAAACTTTTCATGTAACTAGTGGAACCATTAAGGCAGACTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	61.281	98.626	0.604
recF	Bacillus subtilis subsp. subtilis str. 168	43.935	100	0.448