Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LJA36_RS09230 Genome accession   NZ_CP085282
Coordinates   1971739..1972566 (-) Length   275 a.a.
NCBI ID   WP_004264723.1    Uniprot ID   A7Z0F5
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966739..1977566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS09205 abrB 1969079..1969369 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  LJA36_RS09210 rsmI 1969419..1970300 (-) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LJA36_RS09215 - 1970275..1970574 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LJA36_RS09220 - 1970561..1971304 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LJA36_RS09225 yabA 1971365..1971724 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  LJA36_RS09230 yaaT 1971739..1972566 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  LJA36_RS09235 holB 1972569..1973558 (-) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  LJA36_RS09240 - 1973570..1974010 (-) 441 WP_004264730.1 DUF327 family protein -
  LJA36_RS09245 darA 1974023..1974352 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  LJA36_RS09250 tmk 1974423..1975061 (-) 639 WP_007409918.1 dTMP kinase -
  LJA36_RS09255 - 1975058..1976491 (-) 1434 WP_015416648.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31160.93 Da        Isoelectric Point: 4.6504

>NTDB_id=538092 LJA36_RS09230 WP_004264723.1 1971739..1972566(-) (yaaT) [Bacillus amyloliquefaciens strain TPS17]
MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFEVCQKKVADHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDLGEMITTANGPAKVVGLNI
LERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=538092 LJA36_RS09230 WP_004264723.1 1971739..1972566(-) (yaaT) [Bacillus amyloliquefaciens strain TPS17]
TTGTACAACGTAATAGGCGTCCGCTTTAAAAAAGCGGGGAAAATTTATTATTTTGATCCGAACGGATTTGATATAGAACA
AGACAGCTGCGTCATTGTTGAAACCGTAAGAGGTGTCGAATACGGGCAGGTTGTCATCGCAAATAAACAAGTGGACGAGC
ATGATGTTGTGCTTCCGCTTCGAAAGGTCATACGCGTTGCTGATGAACGCGATCTTCTCATTGTAGAAGAAAACAAACAG
GAGGCCCTGTCCGCTTTTGAAGTGTGTCAGAAAAAAGTGGCTGACCACGGCTTAGATATGAAGCTGGTTGATGTTGAGTT
TACATTTGACCGCAATAAAGTCATTTTTTACTTTACAGCAGACGGACGGGTTGATTTCAGGGAATTGGTCAAAGACTTGG
CTTCTATCTTTAAAACGAGAATCGAATTGCGCCAAATCGGGGTGAGGGACGAGGCGAAAATGCTCGGCGGTATCGGACCA
TGCGGGAGAATGCTTTGCTGCTCCACGTTCCTCGGTGATTTTGAACCGGTGTCCATCAAAATGGCGAAGGATCAAAATTT
ATCGTTGAACCCAACGAAGATTTCCGGTCTGTGCGGCCGTTTGATGTGCTGTTTGAAGTACGAAAATGATGAGTATGAGA
CGGCAAAAGAACAGCTGCCGGATTTAGGCGAAATGATTACGACGGCAAACGGCCCCGCAAAGGTTGTCGGTCTTAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGAAGAATCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

96.727

100

0.967