Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6K69_RS05020 Genome accession   NZ_CP070062
Coordinates   1001969..1003816 (-) Length   615 a.a.
NCBI ID   WP_207754815.1    Uniprot ID   -
Organism   Coprococcus comes strain FDAARGOS_1339     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 996969..1008816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K69_RS04995 (I6K69_04995) - 997942..998799 (+) 858 WP_008374422.1 carbohydrate ABC transporter permease -
  I6K69_RS05000 (I6K69_05000) - 998792..999568 (+) 777 WP_022220100.1 carbohydrate ABC transporter permease -
  I6K69_RS05005 (I6K69_05005) - 999573..1000250 (+) 678 WP_008374417.1 hypothetical protein -
  I6K69_RS05010 (I6K69_05010) - 1000325..1001437 (-) 1113 WP_022220101.1 AAA family ATPase -
  I6K69_RS05015 (I6K69_05015) - 1001485..1001679 (+) 195 WP_195196569.1 hypothetical protein -
  I6K69_RS05020 (I6K69_05020) rcrQ 1001969..1003816 (-) 1848 WP_207754815.1 ABC transporter ATP-binding protein Regulator
  I6K69_RS05025 (I6K69_05025) - 1003818..1006211 (-) 2394 WP_008374406.1 ABC transporter ATP-binding protein -
  I6K69_RS05030 (I6K69_05030) - 1006244..1006744 (-) 501 WP_117835418.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6K69_RS05035 (I6K69_05035) - 1007020..1008045 (-) 1026 WP_008374402.1 threonine aldolase family protein -
  I6K69_RS05040 (I6K69_05040) thiE 1008042..1008680 (-) 639 WP_008374400.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 68415.00 Da        Isoelectric Point: 6.8706

>NTDB_id=538091 I6K69_RS05020 WP_207754815.1 1001969..1003816(-) (rcrQ) [Coprococcus comes strain FDAARGOS_1339]
MSNQPRRRGPMGGGHGRMGTGEKAKDFKGTMKKLFTYLSEYKIGIFFVMIFAIGSTVFNIIGPKVLGKATTEIFKGLVGK
VSGGSGIDYTKIGKILLTLLCLYVISACFSFIQGYIMTGVSQKLTYRMRKEISEKINRMPMNYFDTTTHGEVLSRVTNDV
DTLSQSLNQSATQMITSVTTIIGVLIMMISISPLMTVIALLILPVSMVLISVIVKHSQKYFKSQQEYLGHINGQVEEVYG
GHNIVKAFNKEEDVIREFDETNDILFRSAWKSQFLSGMMMPIMQFVGNLGYVGVSILGGYLAIKQTIEVGDIQSFIQYVR
SFTQPIQQVAQVANMLQSTAAASERVFEFLDEKEEDQFAENPVSVEGLQGNVEFEHVHFGYNPEHIIINDFSAKVKEGQK
IAIVGPTGAGKTTMIKLLMRFYDVNSGAIKIDGHNIKDFNRSELRQMFGMVLQDTWLFSGSIEDNIKYGKLDATHEEVVA
AAKAAHVHRFVQTLPSGYNMILNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVQIQKAMDNLMKGRTS
FVIAHRLSTIRDADLILVMKDGDIIEQGNHEELLAKNGFYAELYNSQFENATSCA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=538091 I6K69_RS05020 WP_207754815.1 1001969..1003816(-) (rcrQ) [Coprococcus comes strain FDAARGOS_1339]
ATGAGTAATCAGCCAAGAAGAAGAGGACCTATGGGCGGTGGACATGGAAGAATGGGAACCGGCGAGAAGGCAAAAGACTT
CAAAGGTACCATGAAGAAACTTTTTACTTACCTTAGTGAATATAAAATCGGTATTTTCTTTGTTATGATATTTGCAATCG
GAAGTACGGTTTTCAATATTATTGGACCAAAGGTTCTCGGAAAAGCGACGACCGAAATTTTCAAAGGTCTGGTCGGAAAA
GTATCCGGCGGTAGCGGAATTGATTATACAAAGATTGGTAAAATCCTGTTAACTTTATTGTGTCTGTACGTGATCAGCGC
ATGTTTCTCCTTTATCCAGGGATATATCATGACAGGCGTATCACAGAAGCTGACCTATCGCATGCGAAAAGAAATTTCTG
AGAAAATTAACCGCATGCCGATGAATTATTTTGATACGACTACACACGGAGAAGTTCTTTCCAGAGTAACCAATGACGTA
GATACTCTGAGCCAGAGCCTGAACCAGAGTGCAACCCAGATGATCACATCCGTGACAACAATCATCGGTGTACTGATCAT
GATGATCAGTATCAGTCCGCTGATGACCGTGATCGCACTTCTGATCCTGCCGGTATCTATGGTACTGATTTCTGTAATCG
TAAAACACTCACAGAAATACTTCAAAAGCCAGCAGGAATATCTGGGACATATCAATGGTCAGGTAGAAGAAGTATATGGC
GGACATAATATTGTCAAAGCATTCAATAAAGAAGAAGATGTGATCCGCGAATTTGATGAGACTAATGATATCCTGTTCCG
TTCTGCATGGAAATCACAGTTCCTTTCCGGAATGATGATGCCGATCATGCAGTTTGTCGGAAACCTTGGATATGTAGGAG
TTTCTATCTTAGGAGGTTACCTTGCAATCAAACAGACCATCGAAGTTGGAGATATCCAGTCCTTTATCCAGTATGTAAGA
TCCTTTACACAGCCGATCCAGCAGGTTGCACAGGTAGCAAACATGCTCCAGTCGACAGCCGCTGCATCAGAGAGGGTATT
TGAATTTCTGGACGAAAAAGAAGAAGATCAGTTTGCTGAAAATCCAGTATCTGTAGAAGGATTACAGGGAAATGTAGAAT
TTGAACACGTACACTTCGGATACAATCCGGAGCATATCATCATCAATGATTTCTCTGCAAAAGTAAAAGAAGGACAGAAG
ATCGCCATCGTAGGACCAACCGGAGCAGGAAAGACAACCATGATCAAACTGCTGATGCGTTTCTATGATGTCAACAGCGG
GGCAATCAAGATCGATGGACACAACATCAAAGACTTCAACCGGAGCGAACTCAGACAGATGTTTGGAATGGTACTTCAGG
ATACCTGGCTGTTCAGCGGAAGCATCGAAGATAACATTAAATACGGTAAACTCGATGCAACCCACGAAGAAGTCGTAGCC
GCAGCCAAAGCTGCTCACGTACACCGTTTCGTCCAGACTCTTCCAAGCGGATACAACATGATCCTCAACGAAGAAGCTAG
CAACGTATCTCAGGGCCAGAAACAGCTCCTCACGATCGCCAGAGCCATCCTGGCTGATCCAAAGATTCTGATCCTAGACG
AAGCCACCAGCTCCGTAGACACCAGAACCGAAGTCCAGATCCAGAAAGCCATGGATAACCTCATGAAAGGCAGAACCAGC
TTCGTAATCGCCCACAGACTCTCCACCATACGAGACGCAGATCTCATCCTGGTAATGAAAGACGGCGATATCATCGAACA
AGGAAACCACGAAGAACTCCTGGCAAAAAATGGATTCTACGCAGAGCTGTATAACTCGCAATTTGAAAACGCTACAAGCT
GTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.84

94.472

0.499