NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	I6K91_RS08235	Genome accession	NZ_CP070057
Coordinates	1772467..1772976 (+)	Length	169 a.a.
NCBI ID	WP_001831333.1	Uniprot ID	A0A2G7I1N0
Organism	Staphylococcus epidermidis strain FDAARGOS_1361
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1767467..1777976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K91_RS08205 (I6K91_08210)	-	1768248..1769123 (+)	876	WP_002468622.1	mechanosensitive ion channel family protein	-
I6K91_RS08210 (I6K91_08215)	-	1769144..1769347 (+)	204	WP_001831361.1	DUF951 domain-containing protein	-
I6K91_RS08215 (I6K91_08220)	ychF	1769359..1770456 (+)	1098	WP_001831336.1	redox-regulated ATPase YchF	-
I6K91_RS08220 (I6K91_08225)	-	1770689..1770880 (-)	192	WP_001831355.1	hypothetical protein	-
I6K91_RS08225 (I6K91_08230)	-	1770954..1771763 (-)	810	WP_001831342.1	GH25 family lysozyme	-
I6K91_RS08230 (I6K91_08235)	rpsF	1772148..1772444 (+)	297	WP_001831345.1	30S ribosomal protein S6	-
I6K91_RS08235 (I6K91_08240)	ssbA	1772467..1772976 (+)	510	WP_001831333.1	single-stranded DNA-binding protein	Machinery gene
I6K91_RS08240 (I6K91_08245)	rpsR	1773021..1773263 (+)	243	WP_001831354.1	30S ribosomal protein S18	-
I6K91_RS12005	-	1773456..1773619 (-)	164	Protein_1599	XRE family transcriptional regulator	-
I6K91_RS08245 (I6K91_08250)	-	1773733..1773993 (-)	261	WP_001830921.1	hypothetical protein	-
I6K91_RS08250 (I6K91_08255)	-	1774215..1774469 (+)	255	WP_001832461.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
I6K91_RS12120	-	1774549..1774683 (+)	135	WP_001830924.1	hypothetical protein	-
I6K91_RS12010	-	1774691..1774780 (-)	90	Protein_1603	hypothetical protein	-
I6K91_RS08255 (I6K91_08260)	-	1774943..1775575 (+)	633	WP_001830914.1	LysE family translocator	-
I6K91_RS08260 (I6K91_08265)	-	1775596..1776186 (+)	591	WP_204973873.1	histidine phosphatase family protein	-
I6K91_RS08265 (I6K91_08270)	-	1776718..1777095 (-)	378	WP_002455905.1	hypothetical protein	-
I6K91_RS08270 (I6K91_08275)	-	1777315..1777938 (-)	624	WP_002456828.1	NDxxF motif lipoprotein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18680.20 Da Isoelectric Point: 4.9056

                                >NTDB_id=538076 I6K91_RS08235 WP_001831333.1 1772467..1772976(+) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1361]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=538076 I6K91_RS08235 WP_001831333.1 1772467..1772976(+) (ssbA) [Staphylococcus epidermidis strain FDAARGOS_1361]

ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT

TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA

TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC

AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT

GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.607	100	0.68
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	60.377	62.722	0.379

Detailed information NTG0538076