Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K20_RS02555 Genome accession   NZ_CP070048
Coordinates   523755..524384 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1290     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 518755..529384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K20_RS02535 (I6K20_02535) ycbZ 519157..520917 (-) 1761 WP_000156482.1 Lon protease family protein -
  I6K20_RS02540 (I6K20_02540) matP 521103..521555 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I6K20_RS02545 (I6K20_02545) ompA 521631..522671 (-) 1041 WP_001309394.1 porin OmpA -
  I6K20_RS02550 (I6K20_02550) sulA 523027..523536 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I6K20_RS02555 (I6K20_02555) sxy/tfoX 523755..524384 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6K20_RS02560 (I6K20_02560) yccS 524347..526509 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I6K20_RS02565 (I6K20_02565) yccF 526519..526965 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6K20_RS02570 (I6K20_02570) helD 527088..529142 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=538025 I6K20_RS02555 WP_000839153.1 523755..524384(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1290]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=538025 I6K20_RS02555 WP_000839153.1 523755..524384(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1290]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1