Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SPB_RS01290 Genome accession   NZ_AEUT02000001
Coordinates   252929..256567 (+) Length   1212 a.a.
NCBI ID   WP_003105105.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247929..261567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS01280 (SPB_0260) - 248544..249488 (-) 945 WP_003103764.1 neutral zinc metallopeptidase -
  SPB_RS01285 (SPB_0261) rexB 249676..252939 (+) 3264 WP_037621282.1 ATP-dependent nuclease subunit B Machinery gene
  SPB_RS01290 (SPB_0262) rexA 252929..256567 (+) 3639 WP_003105105.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SPB_RS01295 (SPB_0263) - 256678..257808 (+) 1131 WP_003104056.1 aminotransferase -
  SPB_RS01300 (SPB_0264) - 257823..258635 (+) 813 WP_003104103.1 transporter substrate-binding domain-containing protein -
  SPB_RS01305 (SPB_0265) rpsU 258763..258939 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  SPB_RS01310 (SPB_0266) mscL 259049..259429 (-) 381 WP_003104850.1 large conductance mechanosensitive channel protein MscL -
  SPB_RS01315 (SPB_0267) dnaG 259556..261367 (+) 1812 WP_003103627.1 DNA primase -

Sequence

Protein


Download         Length: 1212 a.a.        Molecular weight: 139652.44 Da        Isoelectric Point: 5.6951

>NTDB_id=53784 SPB_RS01290 WP_003105105.1 252929..256567(+) (rexA) [Streptococcus parauberis NCFD 2020]
MNFKPFLTADQIKALQLHEASSNKKQKRTPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFT
VKAATELKERLEKKLVEAIKASDDYEMKSFLNYQLQSIHIADIGTMDSFTQKLISEYGYTLGIAPKYRIMQDKSEQDVIK
DIIYKDLFEIYMASDETGDFLRLVKNFSGNRKDSNGFKEIVNKVYTFSQSTENPLLWLDEVFLKGAQDYQGYADLPDYII
TDFLKIMSETAKQLRDLTEMEGYPKEKKDGKPTAKYTGHLKIIDYLEQNANEFNYIEDKDKISHLANEVSNLLPAGDSIT
VNKIAYQVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIAHFAIALLETYPEIR
QLYQDKYHEVMVDEYQDNNHMQERLLDLLSSGHNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQGKLILLKENFR
SQSEVLDVTNAIFTHLMDEEIGDILYDDNHRLIPGSAKQRELKTSNQAQVWIYDTDETSNPEPDSESDNDNLSPGQVKIV
AKEIIRLHQEEAVPFSEITLLVSSRTRNDSIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALM
RSPMFNFDEDQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQKQSLYSLIWKI
YNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMIDKILNSQNDLADVDVAKPKDAVSIMTIHKSKG
LEFQYVFILNCDKKFALKDIHSPMILSRHRGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLF
YVAMTRAEKKLYLIGKGSQKKLVDKFDGQKEGNHLPKALRESMQSFQEWILAIQAAFPLKDLHFNLAYIDDSQLTDQEIG
HLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVRTPSQIKKFYEPIMPSEGIDIISKTPFLPAEI
VLPDFSKEKTVLASDIGSAMHELMQRIPISDSLSLDDVEEAKRLIDASEEVKAALNLNMVFDFFEHTELGQMLQRNKERL
YREAPFAMLKMDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKYKNPLDIGHRYQDQMELYAEALQKAYGIHKIEKHLV
LLGGKKVEIITL

Nucleotide


Download         Length: 3639 bp        

>NTDB_id=53784 SPB_RS01290 WP_003105105.1 252929..256567(+) (rexA) [Streptococcus parauberis NCFD 2020]
ATGAACTTTAAGCCATTTTTAACTGCTGATCAAATCAAAGCTTTGCAATTACATGAAGCAAGTTCTAATAAAAAGCAAAA
ACGGACACCTGAGCAAATTGAAGCCATTTATACAAGTGGACAAAATGTTCTTGTATCAGCTTCAGCTGGTTCAGGTAAAA
CCTTTGTTATGGTTGAACGAATCATAGATAAGCTTCTCCGTGGAGTTGCAATCGAGGAAATGTTTATCTCTACATTTACT
GTTAAAGCAGCTACGGAATTAAAAGAACGTCTTGAAAAGAAATTAGTTGAGGCAATTAAAGCTAGTGATGATTATGAGAT
GAAATCTTTTCTCAATTACCAACTCCAGTCTATACACATAGCTGACATAGGAACAATGGATTCCTTCACCCAAAAGTTGA
TTTCAGAATATGGTTATACCTTAGGAATTGCGCCCAAATATCGCATTATGCAAGACAAGTCTGAGCAAGATGTTATAAAA
GATATTATTTATAAGGACCTATTTGAAATTTACATGGCATCAGATGAGACTGGTGACTTCCTCAGATTAGTCAAAAACTT
TTCTGGAAATCGCAAGGATTCAAATGGTTTTAAGGAAATTGTCAATAAGGTCTACACCTTCAGTCAATCAACGGAAAATC
CCTTATTATGGCTAGATGAGGTTTTCTTAAAAGGAGCACAAGACTACCAAGGCTATGCTGATTTACCGGATTATATTATC
ACTGATTTCCTCAAAATCATGTCTGAAACAGCAAAGCAATTACGTGATTTAACTGAGATGGAAGGTTATCCAAAAGAGAA
AAAAGATGGTAAACCAACGGCTAAGTATACAGGACACTTAAAAATAATTGATTACTTAGAGCAGAACGCTAATGAGTTTA
ATTATATTGAAGATAAAGATAAGATAAGTCATTTAGCTAACGAAGTTTCAAACTTATTACCAGCAGGAGATTCTATTACA
GTTAACAAAATCGCCTATCAAGTCTATAAGCAAATTAATGCTAGCTTAAGAAACTTACGTCATCTTGATACCATTATTCA
GTATCAAGCAGAAAGTATCCCACTTTTAATCCTTCTGAAAAATTTTGTTGTTGATTTTTCAAATGCTTATCTAGATCGCA
AAAAAATTGAGAATGCTTTTGAATTTTCAGACATTGCTCATTTTGCAATTGCTCTTCTAGAAACATACCCAGAGATTAGA
CAGCTGTATCAAGATAAGTACCATGAAGTAATGGTTGATGAGTATCAGGATAACAATCACATGCAAGAACGACTACTTGA
CTTATTATCAAGTGGGCATAATCGTTTTATGGTAGGTGATATAAAACAATCGATTTATCGCTTCCGTCAAGCTGACCCAC
AAATCTTTAATAGTAAATTTAAAGCGTATCAGGAAGATCCAAATCAAGGGAAATTAATCCTACTAAAAGAAAATTTCCGG
AGTCAATCGGAAGTTCTTGATGTAACAAATGCTATATTTACTCATTTGATGGATGAAGAAATTGGTGATATCCTTTATGA
TGACAATCATCGTCTCATCCCAGGAAGTGCAAAACAAAGAGAACTGAAAACAAGTAATCAAGCTCAAGTCTGGATTTATG
ACACAGATGAGACAAGTAATCCTGAACCTGATTCAGAAAGTGACAATGACAACCTTAGCCCAGGTCAAGTCAAGATTGTA
GCAAAAGAAATAATCCGTCTTCATCAAGAAGAAGCTGTACCCTTTTCAGAAATTACCTTATTGGTCTCATCCAGAACGCG
TAATGACAGTATTTTTCAAACCTTTAATCAGTACGGCATACCACTAGTGGCAGATGGCGGTCAAGAAAACTATCTGAAGT
CAGTAGAAGTCATGGTTATGCTAGAAACCCTTCGATCCATCAACAATCCTTATAATGACTATGCTTTGGTTGCCTTAATG
CGATCGCCAATGTTTAACTTTGACGAAGATCAATTGGCAAGAATTGCTTTGCAGACAAGCCAAACTCAAAAGTTAGATAG
TTATTATGAAAAATTAAAACTAGCAAAAAGTGGACAGGGTCAGCAGCGACAATTAATTACTACTGAATTAGCCGAAAAAA
TTGGCAAATTTCTAAGTTATCTTAGTCAATGGCGAACCTATTCTCAGAAGCAATCATTGTATTCCCTAATTTGGAAAATT
TATAATGATCGATTCTATTTTGATTTTGTTGGAACATTACCGAAAGCTGAACAGGCTCAGGCCAACTTGTACGCACTTGC
CTTACGGGCACAGCAATTCGAGAAGACAGGGTTTAAAGGTTTAACACGGTTTATCGGAATGATTGATAAAATTCTAAATA
GTCAAAATGACTTGGCTGATGTTGATGTTGCGAAACCAAAAGATGCGGTTAGTATCATGACTATTCATAAATCGAAAGGC
TTAGAGTTTCAGTATGTCTTTATCTTAAACTGTGATAAAAAATTTGCCTTGAAAGATATCCACTCACCGATGATTTTAAG
CCGCCACCGTGGGGCTGGAATTAAATTTTTAGCTGATTTAAAAGACAAATTACAAGCTAATCAACTGGCTAGTCTAAAAG
TTTATCTGGAAACAATTCCTTACCAAATGAATCGTCAGGAGTTAATCTTTGCTACCCTATCAGAACAAATGCGACTCTTC
TATGTGGCGATGACCAGAGCAGAGAAAAAATTGTATTTGATTGGTAAAGGAAGTCAAAAGAAATTAGTAGATAAATTTGA
TGGTCAAAAAGAAGGAAACCACTTACCGAAAGCTTTAAGAGAAAGTATGCAAAGCTTTCAAGAATGGATTCTCGCTATCC
AGGCTGCCTTTCCACTAAAAGACTTGCATTTTAATCTAGCATATATTGATGATAGTCAACTTACTGATCAAGAAATTGGC
CATTTAGAAAACAAACATAGTTTAGATCCTGATAATCTCCAAAATAACCGGCAGACTGATGAGATTGCGCGTGCCATTGA
TATGTTGGATAAAGTCCAAGAGCTAAATCAAACATACCACGCGGCGATTACTTTACCAACAGTTCGTACCCCAAGTCAAA
TTAAGAAGTTTTATGAACCAATTATGCCTTCTGAAGGGATTGACATTATCAGTAAAACACCATTTTTACCGGCTGAAATT
GTCTTGCCTGATTTTTCAAAAGAAAAAACAGTATTGGCTAGTGATATTGGTTCAGCAATGCATGAACTAATGCAGCGAAT
TCCCATCTCTGATTCTCTTAGCTTAGATGATGTTGAAGAAGCTAAAAGGTTAATTGATGCAAGTGAGGAAGTTAAAGCAG
CATTAAACCTCAATATGGTGTTTGATTTCTTTGAACATACTGAATTAGGTCAAATGCTTCAAAGAAATAAAGAACGTTTA
TATCGTGAAGCACCATTTGCCATGCTCAAAATGGATAATGCCAGCCACGAAAAATTTGTTGTTCGTGGGATCATTGATGG
TTTCTTACGTTTTGATGATAGAATTATCCTTTTTGATTATAAAACGGACAAGTACAAGAATCCTCTTGATATTGGCCATC
GTTACCAAGACCAAATGGAACTATATGCAGAAGCTCTCCAAAAAGCCTATGGCATTCATAAAATTGAAAAACATTTAGTC
CTACTTGGTGGAAAAAAAGTTGAAATAATAACCTTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-894)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1050-1189)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

48.295

100

0.491

Multiple sequence alignment