Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SPB_RS01285 Genome accession   NZ_AEUT02000001
Coordinates   249676..252939 (+) Length   1087 a.a.
NCBI ID   WP_037621282.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 244676..257939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS01260 (SPB_0256) - 246038..246280 (+) 243 WP_003104897.1 PfkB family carbohydrate kinase -
  SPB_RS01265 (SPB_0257) - 246353..246718 (+) 366 WP_003105864.1 OsmC family protein -
  SPB_RS01270 (SPB_0258) - 246771..247844 (+) 1074 WP_003103215.1 ABC transporter permease -
  SPB_RS01275 (SPB_0259) - 247853..248521 (+) 669 WP_003103564.1 ABC transporter ATP-binding protein -
  SPB_RS01280 (SPB_0260) - 248544..249488 (-) 945 WP_003103764.1 neutral zinc metallopeptidase -
  SPB_RS01285 (SPB_0261) rexB 249676..252939 (+) 3264 WP_037621282.1 ATP-dependent nuclease subunit B Machinery gene
  SPB_RS01290 (SPB_0262) rexA 252929..256567 (+) 3639 WP_003105105.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SPB_RS01295 (SPB_0263) - 256678..257808 (+) 1131 WP_003104056.1 aminotransferase -

Sequence

Protein


Download         Length: 1087 a.a.        Molecular weight: 125637.13 Da        Isoelectric Point: 4.7876

>NTDB_id=53783 SPB_RS01285 WP_037621282.1 249676..252939(+) (rexB) [Streptococcus parauberis NCFD 2020]
MRLLYTDINNSLTQILVNHAQDYAQTGSKVFYIAPNSLSFEKERSVLELLDREASFDITITRFAQLARYFTLDIDNHSNS
LTDAALVMVIYRSIMQLTEDDLSVYSQLRADLTFVEQLKDLYKELKISNLSVFDISFENERKAHDLITIFTKIEEVLQAE
SLVQENPLNSLTDHIIQGHLDQELSTTVLVIDGFTRFSAEEELLVAALNDKCQEVVIGTYISKKAQAKSYIEGNLYQASL
DFMRDLSGHFQAKMEYVTSQQSFHEEFGLLSELLEAEADFTQTDKMLPAQARERIHIWQSLNQKEELEHIAKAIRQKLYQ
GHRYKDILVLLGDVEAYQAQIGPVFDKYEIPYYLGRSEAILHHPLVQFVESLERCRSYNWRREDIVNLLKSGLFGHFEKD
WVDQFEAYVEFADINGYTKFSRPFEVNSTDGNNHFRFDLEIVNQIREFSFSNLAQLFKSQKQKGLSLLEKLMTLLNAVDL
PKNFQEMMTVQDENEQERDQEVWKTFVSILEDFQLVFANEKLTLDQTLSLLKMAMQAANYRAVPATLDVVTVKSYDLVEP
HSKPFVMALGLTQNNFPKKTKNTSLISDQERSQTNEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNE
SSEDMSTYLKSVHQYGIPIEEKGKNNLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWTVMLRYLKKRLANENL
QFPQAKNHLETKAISEEVMSLRYPEQKPMSLSTSALTVFFDNQYKYFLQYVLGLQELQTIHPDARQHGTYLHKVFETIMG
DHRPIDFDQKVEDALNVTRQNNQFKHFYLEDAQGRYSLQVLEDIAKSTAGILKLNQNLKVLSQEEAFELPITQSLLVKGK
IDRIDQLVDDSIGIVDYKSSANKFDIGCFYNGLNSQLVTYLAALREKAAAMSTEEKAISIFGAMYLHLQDPKLDLKDFKQ
LDDKLVEEVYKDLTYKGIFLEDEKEKLSDGSYQTKNNLYSQEEVNQLVAFNQFLYEEAEGFIRRGHFLINPYTEDGKTVK
GDQLKAITRFESDLDMGQARQLVTLPTREKREGFLTMMKKEVSPNEL

Nucleotide


Download         Length: 3264 bp        

>NTDB_id=53783 SPB_RS01285 WP_037621282.1 249676..252939(+) (rexB) [Streptococcus parauberis NCFD 2020]
ATGAGATTACTATATACTGATATAAATAATTCTTTAACACAGATTCTAGTCAACCATGCTCAAGATTATGCACAAACTGG
TAGCAAGGTTTTTTATATTGCTCCAAATTCATTATCTTTTGAAAAGGAACGATCGGTCCTAGAATTACTTGATAGAGAAG
CCTCGTTTGATATTACGATTACTCGATTTGCTCAATTGGCTCGTTATTTTACACTTGATATTGATAATCATTCTAATTCA
TTGACTGACGCAGCATTAGTGATGGTGATTTACAGAAGTATTATGCAACTTACAGAGGATGATTTATCTGTTTATAGTCA
ATTGAGAGCTGACTTAACCTTTGTCGAACAGTTAAAAGACCTTTATAAAGAATTAAAAATTTCAAATTTATCTGTATTCG
ATATTTCTTTTGAAAACGAACGTAAAGCACATGATTTAATTACTATTTTCACAAAAATTGAAGAAGTACTGCAAGCAGAA
TCCTTAGTTCAAGAGAATCCTCTTAATTCTCTAACTGACCATATAATACAAGGCCATTTAGACCAAGAGTTATCGACAAC
TGTGCTTGTTATTGATGGCTTTACCCGTTTTTCTGCAGAAGAAGAATTGTTAGTTGCAGCCTTGAACGATAAGTGTCAAG
AAGTCGTGATTGGAACCTACATCAGTAAAAAAGCACAAGCCAAATCATATATTGAAGGAAATCTTTATCAAGCCAGTTTA
GATTTTATGAGGGACTTATCTGGTCATTTTCAGGCTAAGATGGAGTATGTTACTAGTCAACAATCATTTCATGAAGAGTT
TGGTCTCTTAAGTGAATTATTGGAGGCTGAAGCGGACTTTACTCAGACCGACAAAATGTTGCCAGCGCAAGCTCGAGAGC
GGATTCATATCTGGCAATCGCTCAATCAAAAAGAGGAACTTGAGCATATCGCCAAAGCTATTCGCCAAAAGTTGTATCAG
GGTCATCGCTATAAGGACATTTTAGTTCTGTTAGGCGATGTTGAGGCTTATCAGGCGCAAATTGGTCCCGTTTTTGATAA
GTATGAGATTCCATATTATTTAGGTCGCTCGGAGGCGATTTTACATCATCCTTTGGTTCAGTTTGTAGAATCTTTGGAGA
GATGTCGTTCCTATAATTGGCGTCGGGAGGACATAGTTAACCTTTTGAAATCAGGGCTCTTTGGACATTTTGAGAAAGAC
TGGGTTGATCAGTTTGAAGCTTATGTTGAATTTGCTGATATTAATGGTTACACCAAGTTTTCACGTCCATTTGAGGTAAA
CTCAACAGATGGCAATAATCATTTTCGTTTTGATTTGGAAATAGTGAACCAGATCAGAGAGTTTTCCTTTAGTAATTTAG
CCCAGTTATTCAAAAGTCAGAAGCAAAAAGGGCTGTCGCTTCTCGAGAAACTAATGACACTCTTAAATGCAGTCGACTTG
CCGAAGAACTTTCAAGAGATGATGACAGTGCAAGATGAAAATGAACAAGAGCGTGATCAGGAAGTCTGGAAAACCTTCGT
ATCTATTCTAGAGGATTTCCAACTAGTCTTTGCAAATGAAAAGTTGACTTTAGATCAAACCTTATCCCTTTTGAAAATGG
CTATGCAAGCTGCTAATTACCGTGCAGTTCCTGCAACATTAGATGTGGTCACTGTTAAATCTTATGATCTAGTAGAACCT
CACAGTAAGCCCTTTGTAATGGCTTTAGGATTGACTCAAAATAATTTTCCTAAGAAGACAAAAAATACCAGTCTTATTTC
TGATCAAGAAAGAAGTCAAACTAATGAAGATCAGGATTATTTCCATCGATTTGACCTTGCAAGTCAGGATAATGCCAAAA
AGAATCATTTTACGGCCTTATCATTGTTTAATGCAGCAACAGAAGAATTACTTTTAAGCTATCCGCTGATGTTAAATGAG
TCCTCTGAGGATATGTCTACTTATCTGAAATCAGTTCATCAATATGGTATTCCGATTGAAGAAAAAGGGAAAAATAATCT
GTCACGAACTGACTTAGATATTGGTAACTATAAGTCCTTGTTATCACAACTCGTTGAAATAAATCGTGGTGCTATTGAAG
GTGAATTGCAAGAAGAAGATAAAAATTTCTGGACAGTTATGCTTCGTTACTTAAAGAAACGCCTTGCAAATGAAAATCTT
CAGTTTCCACAAGCAAAAAATCATTTGGAAACTAAGGCTATTAGTGAAGAAGTCATGTCATTAAGGTATCCTGAGCAAAA
ACCAATGTCACTTTCAACATCTGCCTTGACTGTCTTTTTTGATAATCAATACAAATATTTCTTGCAATATGTTCTTGGTC
TGCAAGAATTGCAAACTATCCATCCAGATGCTCGCCAACACGGAACCTATTTACACAAAGTATTTGAAACAATTATGGGC
GATCATCGTCCAATTGATTTTGACCAGAAGGTAGAGGATGCCTTAAATGTAACACGTCAAAACAATCAATTTAAACATTT
TTATTTGGAAGATGCGCAGGGCAGATACAGTTTACAAGTTTTAGAAGATATCGCAAAATCAACTGCAGGCATTCTAAAAC
TTAATCAGAATCTTAAAGTCTTAAGTCAGGAAGAAGCATTTGAATTGCCAATTACTCAGTCCTTATTAGTCAAAGGTAAA
ATTGATAGGATTGATCAACTTGTTGATGATAGTATTGGTATTGTTGATTACAAGTCAAGTGCTAACAAATTTGACATCGG
CTGTTTTTACAATGGCTTAAATTCACAGCTAGTTACCTATTTAGCAGCCTTAAGAGAAAAAGCGGCAGCCATGTCGACAG
AAGAAAAAGCGATTTCTATTTTTGGTGCTATGTACTTACATTTACAAGATCCTAAATTAGATTTAAAAGATTTTAAACAG
TTGGATGATAAATTAGTTGAGGAAGTATACAAAGATTTAACTTATAAAGGTATTTTCTTAGAAGATGAAAAAGAGAAGCT
TTCAGACGGTTCCTACCAAACTAAAAATAACTTGTATAGCCAAGAAGAAGTAAATCAATTAGTCGCCTTTAATCAATTTC
TCTATGAGGAAGCTGAAGGTTTTATTCGTAGAGGTCATTTCTTGATTAATCCATATACAGAGGATGGAAAAACTGTTAAG
GGAGATCAACTAAAAGCAATTACAAGGTTTGAATCTGATCTTGATATGGGTCAAGCTCGTCAATTAGTGACCCTTCCGAC
TAGAGAAAAAAGGGAAGGATTTTTAACCATGATGAAAAAGGAGGTGAGTCCAAATGAACTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(750-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

40.892

98.988

0.405

Multiple sequence alignment