Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LIN98_RS02965 Genome accession   NZ_CP085096
Coordinates   583446..584255 (+) Length   269 a.a.
NCBI ID   WP_005544971.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578446..589255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS02955 - 579805..580650 (-) 846 WP_005544967.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  LIN98_RS02960 - 580745..583312 (-) 2568 WP_005566815.1 penicillin-binding protein 1A -
  LIN98_RS02965 comA 583446..584255 (+) 810 WP_005544971.1 hypothetical protein Machinery gene
  LIN98_RS02970 - 584266..584784 (+) 519 WP_005544973.1 PilN domain-containing protein -
  LIN98_RS02975 - 584781..585305 (+) 525 WP_005543969.1 hypothetical protein -
  LIN98_RS02980 - 585305..585697 (+) 393 WP_005544975.1 hypothetical protein -
  LIN98_RS02985 comE 585717..587126 (+) 1410 WP_050846294.1 type IV pilus secretin PilQ Machinery gene
  LIN98_RS02990 aroK 587340..587867 (+) 528 WP_005555432.1 shikimate kinase AroK -
  LIN98_RS02995 aroB 587891..588979 (+) 1089 WP_005569125.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31326.94 Da        Isoelectric Point: 6.1096

>NTDB_id=537823 LIN98_RS02965 WP_005544971.1 583446..584255(+) (comA) [Aggregatibacter actinomycetemcomitans strain 4S]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=537823 LIN98_RS02965 WP_005544971.1 583446..584255(+) (comA) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.541

96.283

0.39
  comA Haemophilus influenzae 86-028NP

40.541

96.283

0.39