Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LIN97_RS02090 Genome accession   NZ_CP085095
Coordinates   387377..388186 (-) Length   269 a.a.
NCBI ID   WP_233115437.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382377..393186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN97_RS02060 aroB 382653..383741 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  LIN97_RS02065 aroK 383765..384292 (-) 528 WP_005555432.1 shikimate kinase AroK -
  LIN97_RS02070 comE 384506..385915 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  LIN97_RS02075 - 385935..386327 (-) 393 WP_005544975.1 hypothetical protein -
  LIN97_RS02080 - 386327..386851 (-) 525 WP_005543969.1 hypothetical protein -
  LIN97_RS02085 - 386848..387366 (-) 519 WP_005544973.1 PilN domain-containing protein -
  LIN97_RS02090 comA 387377..388186 (-) 810 WP_233115437.1 competence protein ComA Machinery gene
  LIN97_RS02095 - 388320..390887 (+) 2568 WP_005566815.1 penicillin-binding protein 1A -
  LIN97_RS02100 - 390982..391827 (+) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31371.03 Da        Isoelectric Point: 6.1096

>NTDB_id=537766 LIN97_RS02090 WP_233115437.1 387377..388186(-) (comA) [Aggregatibacter actinomycetemcomitans strain 5R]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLVVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETLLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=537766 LIN97_RS02090 WP_233115437.1 387377..388186(-) (comA) [Aggregatibacter actinomycetemcomitans strain 5R]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCTGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.154

96.283

0.387
  comA Haemophilus influenzae 86-028NP

40.154

96.283

0.387