Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LIN99_RS02925 Genome accession   NZ_CP085093
Coordinates   576805..577614 (+) Length   269 a.a.
NCBI ID   WP_233115437.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 23S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571805..582614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN99_RS02915 - 573164..574009 (-) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  LIN99_RS02920 - 574104..576671 (-) 2568 WP_005566815.1 penicillin-binding protein 1A -
  LIN99_RS02925 comA 576805..577614 (+) 810 WP_233115437.1 competence protein ComA Machinery gene
  LIN99_RS02930 - 577625..578143 (+) 519 WP_005544973.1 PilN domain-containing protein -
  LIN99_RS02935 - 578140..578664 (+) 525 WP_005543969.1 hypothetical protein -
  LIN99_RS02940 - 578664..579056 (+) 393 WP_005544975.1 hypothetical protein -
  LIN99_RS02945 comE 579076..580485 (+) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  LIN99_RS02950 aroK 580699..581226 (+) 528 WP_005555432.1 shikimate kinase AroK -
  LIN99_RS02955 aroB 581250..582338 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31371.03 Da        Isoelectric Point: 6.1096

>NTDB_id=537672 LIN99_RS02925 WP_233115437.1 576805..577614(+) (comA) [Aggregatibacter actinomycetemcomitans strain 23S]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLVVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETLLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=537672 LIN99_RS02925 WP_233115437.1 576805..577614(+) (comA) [Aggregatibacter actinomycetemcomitans strain 23S]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCTGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.154

96.283

0.387
  comA Haemophilus influenzae 86-028NP

40.154

96.283

0.387