Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LIN93_RS00665 Genome accession   NZ_CP085091
Coordinates   131094..131783 (+) Length   229 a.a.
NCBI ID   WP_005547547.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126094..136783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS00640 nanQ 126373..126843 (+) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  LIN93_RS00645 ampD 127317..127871 (-) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LIN93_RS00650 pilA 127993..128445 (+) 453 WP_249852904.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LIN93_RS00655 pilB 128472..129881 (+) 1410 WP_019518272.1 GspE/PulE family protein Machinery gene
  LIN93_RS00660 pilC 129874..131097 (+) 1224 WP_025298077.1 type II secretion system F family protein Machinery gene
  LIN93_RS00665 pilD 131094..131783 (+) 690 WP_005547547.1 A24 family peptidase Machinery gene
  LIN93_RS00670 coaE 131833..132456 (+) 624 WP_005547548.1 dephospho-CoA kinase -
  LIN93_RS00675 yacG 132446..132658 (+) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  LIN93_RS00680 - 132658..132930 (+) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  LIN93_RS00685 - 133327..134700 (+) 1374 WP_005547554.1 sodium:alanine symporter family protein -
  LIN93_RS00690 raiA 134928..135251 (+) 324 WP_005540708.1 ribosome-associated translation inhibitor RaiA -
  LIN93_RS00695 - 135402..135956 (+) 555 WP_005540709.1 DUF5358 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26018.72 Da        Isoelectric Point: 8.2297

>NTDB_id=537556 LIN93_RS00665 WP_005547547.1 131094..131783(+) (pilD) [Aggregatibacter actinomycetemcomitans strain 30S]
MMWLLFLLGGALCGWRVHRYVEHFADNLSREVHAAYTEIYPQNPPHFTAEKSILKPLKRHFSAPLYSLLFTLLFIICYAI
NEPLQALCFALYGALLIAISLVDWHYRLISPALCQALFTLGLGAAYWQIGTLTLEQSLQSAVVFFGVFYAIYHAAKWYYR
QEALGRGDYWLALGLGVFLPAHQFPVFLFLACFFGLLYAAYAKYQHRTLNAVPFGPFMSLAGVVCLLLN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=537556 LIN93_RS00665 WP_005547547.1 131094..131783(+) (pilD) [Aggregatibacter actinomycetemcomitans strain 30S]
ATGATGTGGCTACTTTTTTTGCTTGGTGGCGCACTATGCGGGTGGCGTGTTCATCGTTATGTAGAACATTTCGCCGATAA
CCTCAGCCGCGAGGTTCATGCCGCCTACACGGAAATTTACCCGCAAAACCCACCGCACTTTACAGCGGAAAAGTCGATTC
TGAAACCGCTTAAACGGCATTTTTCCGCGCCCCTTTACAGCCTTTTATTCACCTTGCTGTTCATTATTTGTTATGCCATC
AATGAACCGTTACAAGCCCTATGCTTTGCCCTTTATGGCGCCTTATTAATTGCCATTTCCCTAGTGGATTGGCACTATCG
CTTGATTTCACCCGCCTTATGCCAAGCCTTGTTTACCCTCGGTTTAGGCGCGGCATACTGGCAAATCGGCACATTAACAT
TGGAGCAAAGCCTGCAAAGTGCGGTTGTTTTTTTCGGTGTTTTTTATGCCATCTACCACGCCGCAAAATGGTACTACCGA
CAAGAAGCTCTCGGACGCGGCGATTATTGGTTGGCACTGGGCTTAGGCGTTTTTCTCCCGGCACACCAATTTCCTGTTTT
TTTATTCCTCGCCTGCTTTTTCGGCTTACTTTATGCTGCCTACGCCAAATACCAACATCGCACACTCAACGCCGTGCCTT
TCGGTCCCTTTATGTCCCTAGCCGGCGTGGTCTGTTTATTGCTTAATTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.301

100

0.393
  pilD Haemophilus influenzae Rd KW20

38.839

97.817

0.38