Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | I6K93_RS04135 | Genome accession | NZ_CP069951 |
| Coordinates | 824677..825549 (+) | Length | 290 a.a. |
| NCBI ID | WP_002484839.1 | Uniprot ID | A0A4Y7VXK4 |
| Organism | Staphylococcus epidermidis strain FDAARGOS_1363 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 789027..859209 | 824677..825549 | within | 0 |
Gene organization within MGE regions
Location: 789027..859209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K93_RS03990 (I6K93_03995) | - | 790114..790857 (+) | 744 | WP_002439460.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| I6K93_RS03995 (I6K93_04000) | pknB | 790854..792857 (+) | 2004 | WP_002439462.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| I6K93_RS04000 (I6K93_04005) | rsgA | 793165..794040 (+) | 876 | WP_002456227.1 | ribosome small subunit-dependent GTPase A | - |
| I6K93_RS04005 (I6K93_04010) | rpe | 794041..794685 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| I6K93_RS04010 (I6K93_04015) | - | 794690..795325 (+) | 636 | WP_002489340.1 | thiamine diphosphokinase | - |
| I6K93_RS04015 (I6K93_04020) | rpmB | 795408..795596 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| I6K93_RS04020 (I6K93_04025) | - | 795954..796328 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| I6K93_RS04025 (I6K93_04030) | fakA | 796343..798001 (+) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| I6K93_RS04030 (I6K93_04035) | recG | 798205..800253 (+) | 2049 | WP_020368084.1 | ATP-dependent DNA helicase RecG | - |
| I6K93_RS04035 (I6K93_04040) | fapR | 800412..800972 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| I6K93_RS04040 (I6K93_04045) | plsX | 800974..801951 (+) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| I6K93_RS04045 (I6K93_04050) | fabD | 801953..802879 (+) | 927 | WP_001830062.1 | ACP S-malonyltransferase | - |
| I6K93_RS04050 (I6K93_04055) | fabG | 802872..803606 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| I6K93_RS04055 (I6K93_04060) | - | 803833..804066 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| I6K93_RS04060 (I6K93_04065) | rnc | 804181..804918 (+) | 738 | WP_002470220.1 | ribonuclease III | - |
| I6K93_RS04065 (I6K93_04070) | smc | 805045..808614 (+) | 3570 | WP_002502436.1 | chromosome segregation protein SMC | - |
| I6K93_RS04070 (I6K93_04075) | ftsY | 808611..809837 (+) | 1227 | WP_001830080.1 | signal recognition particle-docking protein FtsY | - |
| I6K93_RS04075 (I6K93_04080) | - | 809839..810171 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| I6K93_RS04080 (I6K93_04085) | ffh | 810202..811569 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| I6K93_RS04085 (I6K93_04090) | rpsP | 811877..812152 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| I6K93_RS04090 (I6K93_04095) | rimM | 812279..812782 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| I6K93_RS04095 (I6K93_04100) | trmD | 812782..813519 (+) | 738 | WP_049400206.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| I6K93_RS04100 (I6K93_04105) | rplS | 813625..813975 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| I6K93_RS04105 (I6K93_04110) | - | 814505..817108 (-) | 2604 | WP_020368058.1 | YfhO family protein | - |
| I6K93_RS04110 (I6K93_04115) | - | 817101..819701 (-) | 2601 | WP_010959172.1 | YfhO family protein | - |
| I6K93_RS04115 (I6K93_04125) | ylqF | 820030..820893 (+) | 864 | WP_002468554.1 | ribosome biogenesis GTPase YlqF | - |
| I6K93_RS04120 (I6K93_04130) | - | 820898..821668 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| I6K93_RS04125 (I6K93_04135) | sucC | 821776..822942 (+) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| I6K93_RS04130 (I6K93_04140) | sucD | 822964..823872 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| I6K93_RS12090 | - | 824122..824337 (+) | 216 | Protein_802 | transposase | - |
| I6K93_RS04135 (I6K93_04145) | dprA | 824677..825549 (+) | 873 | WP_002484839.1 | DNA-processing protein DprA | Machinery gene |
| I6K93_RS04140 (I6K93_04150) | topA | 825732..827801 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| I6K93_RS04145 (I6K93_04155) | trmFO | 827826..829133 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| I6K93_RS04150 (I6K93_04160) | xerC | 829358..830248 (+) | 891 | WP_002456225.1 | tyrosine recombinase XerC | - |
| I6K93_RS04155 (I6K93_04165) | hslV | 830252..830794 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| I6K93_RS04160 (I6K93_04170) | hslU | 830863..832266 (+) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| I6K93_RS04165 (I6K93_04175) | codY | 832290..833060 (+) | 771 | WP_002439506.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| I6K93_RS04170 (I6K93_04180) | rpsB | 833423..834211 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| I6K93_RS04175 (I6K93_04185) | tsf | 834363..835241 (+) | 879 | WP_002439509.1 | translation elongation factor Ts | - |
| I6K93_RS04180 (I6K93_04190) | pyrH | 835382..836104 (+) | 723 | WP_002439511.1 | UMP kinase | - |
| I6K93_RS04185 (I6K93_04195) | frr | 836121..836675 (+) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| I6K93_RS04190 (I6K93_04200) | - | 836896..837666 (+) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| I6K93_RS04195 (I6K93_04205) | - | 837670..838452 (+) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| I6K93_RS04200 (I6K93_04210) | rseP | 838686..839972 (+) | 1287 | WP_001829501.1 | RIP metalloprotease RseP | - |
| I6K93_RS04205 (I6K93_04215) | - | 839991..841694 (+) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| I6K93_RS04210 (I6K93_04220) | - | 841944..846254 (+) | 4311 | WP_099833848.1 | PolC-type DNA polymerase III | - |
| I6K93_RS04215 (I6K93_04225) | rimP | 846433..846900 (+) | 468 | WP_002439519.1 | ribosome maturation factor RimP | - |
| I6K93_RS04220 (I6K93_04230) | nusA | 846921..848144 (+) | 1224 | WP_001829457.1 | transcription termination factor NusA | - |
| I6K93_RS04225 (I6K93_04235) | - | 848162..848446 (+) | 285 | WP_001829465.1 | YlxR family protein | - |
| I6K93_RS04230 (I6K93_04240) | - | 848446..848763 (+) | 318 | WP_002439520.1 | YlxQ family RNA-binding protein | - |
| I6K93_RS04235 (I6K93_04245) | infB | 848768..850930 (+) | 2163 | WP_002456223.1 | translation initiation factor IF-2 | - |
| I6K93_RS04240 (I6K93_04250) | rbfA | 851233..851583 (+) | 351 | WP_001829509.1 | 30S ribosome-binding factor RbfA | - |
| I6K93_RS04245 (I6K93_04255) | truB | 851721..852638 (+) | 918 | WP_002439525.1 | tRNA pseudouridine(55) synthase TruB | - |
| I6K93_RS04250 (I6K93_04260) | - | 852654..853625 (+) | 972 | WP_001832563.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| I6K93_RS04255 (I6K93_04265) | rpsO | 853745..854014 (+) | 270 | WP_002439528.1 | 30S ribosomal protein S15 | - |
| I6K93_RS04260 (I6K93_04270) | pnp | 854146..856251 (+) | 2106 | WP_001832554.1 | polyribonucleotide nucleotidyltransferase | - |
| I6K93_RS04265 (I6K93_04275) | - | 856619..858292 (+) | 1674 | WP_002457357.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33717.61 Da Isoelectric Point: 9.3616
>NTDB_id=537511 I6K93_RS04135 WP_002484839.1 824677..825549(+) (dprA) [Staphylococcus epidermidis strain FDAARGOS_1363]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=537511 I6K93_RS04135 WP_002484839.1 824677..825549(+) (dprA) [Staphylococcus epidermidis strain FDAARGOS_1363]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |