Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   LIO32_RS07850 Genome accession   NZ_CP085087
Coordinates   1574779..1574952 (-) Length   57 a.a.
NCBI ID   WP_226960408.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569779..1579952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS07845 hpf 1574082..1574624 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LIO32_RS07850 comFA/cflA 1574779..1574952 (-) 174 WP_226960408.1 hypothetical protein Machinery gene
  LIO32_RS07855 - 1575009..1575641 (+) 633 WP_014636235.1 YigZ family protein -
  LIO32_RS07860 prx 1575693..1575911 (-) 219 WP_074389676.1 Paratox Regulator
  LIO32_RS07865 - 1576119..1576856 (-) 738 WP_074389675.1 PlySs2 family phage lysin -
  LIO32_RS07870 - 1576840..1577190 (-) 351 WP_074389674.1 phage holin -
  LIO32_RS07875 - 1577201..1577536 (-) 336 WP_023371100.1 hypothetical protein -
  LIO32_RS07880 - 1577540..1577878 (-) 339 WP_023371101.1 hypothetical protein -
  LIO32_RS07885 - 1577987..1578259 (-) 273 WP_226960409.1 hypothetical protein -
  LIO32_RS07890 - 1578284..1578643 (-) 360 WP_074389673.1 hypothetical protein -
  LIO32_RS07895 - 1578670..1579044 (-) 375 WP_074389672.1 DUF6096 family protein -
  LIO32_RS07900 - 1579055..1579477 (-) 423 WP_074389671.1 phage tail tube protein -
  LIO32_RS07905 - 1579481..1579849 (-) 369 WP_002936856.1 hypothetical protein -

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6738.71 Da        Isoelectric Point: 8.4715

>NTDB_id=537331 LIO32_RS07850 WP_226960408.1 1574779..1574952(-) (comFA/cflA) [Streptococcus suis strain Ssuis_MA2]
MKELENYYGRLFTKYQLTAKEREIAEKVPSITKKNNCFRCGTTFEEENKLPKEAGYV

Nucleotide


Download         Length: 174 bp        

>NTDB_id=537331 LIO32_RS07850 WP_226960408.1 1574779..1574952(-) (comFA/cflA) [Streptococcus suis strain Ssuis_MA2]
ATGAAAGAATTAGAAAATTATTATGGAAGATTATTTACCAAATACCAATTGACAGCAAAAGAAAGAGAAATAGCAGAAAA
AGTGCCAAGTATTACAAAAAAGAATAACTGCTTTCGCTGTGGAACAACTTTTGAAGAAGAAAACAAATTGCCAAAGGAGG
CTGGTTATGTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

45.763

100

0.474
  comFA/cflA Streptococcus pneumoniae D39

45.763

100

0.474
  comFA/cflA Streptococcus pneumoniae R6

45.763

100

0.474
  comFA/cflA Streptococcus pneumoniae TIGR4

45.763

100

0.474
  comFA/cflA Streptococcus mitis SK321

44.068

100

0.456
  comFA/cflA Streptococcus mitis NCTC 12261

48.148

94.737

0.456