Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LIO32_RS05295 Genome accession   NZ_CP085087
Coordinates   1051426..1052091 (-) Length   221 a.a.
NCBI ID   WP_024405695.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1046426..1057091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS05270 - 1047072..1047365 (+) 294 WP_226319149.1 adenylyl-sulfate kinase -
  LIO32_RS05275 - 1047362..1047598 (+) 237 WP_226319150.1 hypothetical protein -
  LIO32_RS05280 xerS 1047765..1048835 (+) 1071 WP_024405698.1 tyrosine recombinase XerS Machinery gene
  LIO32_RS05285 - 1048905..1050413 (-) 1509 WP_024405697.1 phosphoglucomutase -
  LIO32_RS05290 - 1050488..1051429 (-) 942 WP_024405696.1 sensor histidine kinase -
  LIO32_RS05295 braR 1051426..1052091 (-) 666 WP_024405695.1 response regulator transcription factor Regulator
  LIO32_RS05300 - 1052133..1052399 (-) 267 WP_024405694.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LIO32_RS05305 relB 1052383..1052634 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  LIO32_RS05310 - 1052726..1054696 (-) 1971 WP_074389880.1 ABC transporter permease -
  LIO32_RS05315 - 1054697..1055449 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  LIO32_RS05320 - 1055470..1055847 (-) 378 WP_011922413.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  LIO32_RS05325 - 1055860..1056000 (-) 141 WP_012775106.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25433.19 Da        Isoelectric Point: 4.7792

>NTDB_id=537307 LIO32_RS05295 WP_024405695.1 1051426..1052091(-) (braR) [Streptococcus suis strain Ssuis_MA2]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=537307 LIO32_RS05295 WP_024405695.1 1051426..1052091(-) (braR) [Streptococcus suis strain Ssuis_MA2]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTAGGGTTAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGACGATTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475