Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | ASU2_RS00460 | Genome accession | NC_018690 |
| Coordinates | 83987..84535 (+) | Length | 182 a.a. |
| NCBI ID | WP_014990914.1 | Uniprot ID | K0FV81 |
| Organism | Actinobacillus suis H91-0380 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 78987..89535
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASU2_RS00435 (ASU2_00435) | - | 79252..80472 (-) | 1221 | WP_005612726.1 | tyrosine-type recombinase/integrase | - |
| ASU2_RS00445 (ASU2_00440) | gltX | 80777..82219 (-) | 1443 | WP_014990912.1 | glutamate--tRNA ligase | - |
| ASU2_RS00455 (ASU2_00445) | pilF/pilF2 | 82751..83932 (+) | 1182 | WP_014990913.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | Machinery gene |
| ASU2_RS00460 (ASU2_00450) | pilF | 83987..84535 (+) | 549 | WP_014990914.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| ASU2_RS00465 (ASU2_00455) | - | 84611..86950 (+) | 2340 | WP_014990915.1 | Tex family protein | - |
| ASU2_RS00470 (ASU2_00460) | - | 87352..87639 (+) | 288 | WP_014990916.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| ASU2_RS00475 (ASU2_00465) | - | 87639..88061 (+) | 423 | WP_014990917.1 | type II toxin-antitoxin system VapC family toxin | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20655.44 Da Isoelectric Point: 6.9477
>NTDB_id=53724 ASU2_RS00460 WP_014990914.1 83987..84535(+) (pilF) [Actinobacillus suis H91-0380]
MNLAKFLRNLTACMLLPVLFGCSSLLPPPQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLPVLFGCSSLLPPPQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=53724 ASU2_RS00460 WP_014990914.1 83987..84535(+) (pilF) [Actinobacillus suis H91-0380]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTACCTGTGTTGTTCGGTTGTTCTTCTCTGCTTCC
TCCCCCCCAAACCACTTTTAATCGTTCAGAAGCAGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTACCTGTGTTGTTCGGTTGTTCTTCTCTGCTTCC
TCCCCCCCAAACCACTTTTAATCGTTCAGAAGCAGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGTTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTATTATCAACAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
66.489 |
100 |
0.687 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.108 |
91.758 |
0.423 |